Literature DB >> 17472932

Synthetic protocell biology: from reproduction to computation.

Ricard V Solé1, Andreea Munteanu, Carlos Rodriguez-Caso, Javier Macía.   

Abstract

Cells are the building blocks of biological complexity. They are complex systems sustained by the coordinated cooperative dynamics of several biochemical networks. Their replication, adaptation and computational features emerge as a consequence of appropriate molecular feedbacks that somehow define what life is. As the last decades have brought the transition from the description-driven biology to the synthesis-driven biology, one great challenge shared by both the fields of bioengineering and the origin of life is to find the appropriate conditions under which living cellular structures can effectively emerge and persist. Here, we review current knowledge (both theoretical and experimental) on possible scenarios of artificial cell design and their future challenges.

Mesh:

Year:  2007        PMID: 17472932      PMCID: PMC2442389          DOI: 10.1098/rstb.2007.2065

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  77 in total

Review 1.  Artificial cells: prospects for biotechnology.

Authors:  Andrew Pohorille; David Deamer
Journal:  Trends Biotechnol       Date:  2002-03       Impact factor: 19.536

Review 2.  The first cell membranes.

Authors:  David Deamer; Jason P Dworkin; Scott A Sandford; Max P Bernstein; Louis J Allamandola
Journal:  Astrobiology       Date:  2002       Impact factor: 4.335

3.  Design of genetic networks with specified functions by evolution in silico.

Authors:  Paul François; Vincent Hakim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-02       Impact factor: 11.205

4.  "Living" under the challenge of information decay: the stochastic corrector model vs. hypercycles.

Authors:  Elias Zintzaras; Mauro Santos; Eors Szathmary
Journal:  J Theor Biol       Date:  2002-07-21       Impact factor: 2.691

5.  Global transposon mutagenesis and a minimal Mycoplasma genome.

Authors:  C A Hutchison; S N Peterson; S R Gill; R T Cline; O White; C M Fraser; H O Smith; J C Venter
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

Review 6.  Reconstruction of genetic circuits.

Authors:  David Sprinzak; Michael B Elowitz
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

Review 7.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

8.  Protein expression in liposomes.

Authors:  T Oberholzer; K H Nierhaus; P L Luisi
Journal:  Biochem Biophys Res Commun       Date:  1999-08-02       Impact factor: 3.575

9.  Enzymatic RNA replication in self-reproducing vesicles: an approach to a minimal cell.

Authors:  T Oberholzer; R Wick; P L Luisi; C K Biebricher
Journal:  Biochem Biophys Res Commun       Date:  1995-02-06       Impact factor: 3.575

Review 10.  Synthetic biology.

Authors:  Steven A Benner; A Michael Sismour
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

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  26 in total

1.  Question 8: bridging the gap between in silico and in vitro approaches to minimal cells.

Authors:  Fabio Mavelli; Kepa Ruiz-Mirazo
Journal:  Orig Life Evol Biosph       Date:  2007-06-28       Impact factor: 1.950

2.  Piecing together a puzzle. An exposition of synthetic biology.

Authors:  Anna Deplazes
Journal:  EMBO Rep       Date:  2009-05       Impact factor: 8.807

3.  Are we doing synthetic biology?

Authors:  Manuel Porcar; Juli Peretó
Journal:  Syst Synth Biol       Date:  2012-12-05

4.  The challenging biology of transients. A view from the perspective of autonomy.

Authors:  Arantza Etxeberria; Kepa Ruiz-Mirazo
Journal:  EMBO Rep       Date:  2009-08       Impact factor: 8.807

Review 5.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

Review 6.  Autopoiesis 40 years later. A review and a reformulation.

Authors:  Pablo Razeto-Barry
Journal:  Orig Life Evol Biosph       Date:  2012-10-04       Impact factor: 1.950

Review 7.  Systems biology perspectives on minimal and simpler cells.

Authors:  Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

Review 8.  Synthetic transitions: towards a new synthesis.

Authors:  Ricard Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

9.  Monomeric bistability and the role of autoloops in gene regulation.

Authors:  Stefanie Widder; Javier Macía; Ricard Solé
Journal:  PLoS One       Date:  2009-04-30       Impact factor: 3.240

10.  Synthetic organisms and living machines : Positioning the products of synthetic biology at the borderline between living and non-living matter.

Authors:  Anna Deplazes; Markus Huppenbauer
Journal:  Syst Synth Biol       Date:  2009-10-10
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