Literature DB >> 17470789

Tracking the excited-state time evolution of the visual pigment with multiconfigurational quantum chemistry.

Luis Manuel Frutos1, Tadeusz Andruniów, Fabrizio Santoro, Nicolas Ferré, Massimo Olivucci.   

Abstract

The primary event that initiates vision is the photoinduced isomerization of retinal in the visual pigment rhodopsin (Rh). Here, we use a scaled quantum mechanics/molecular mechanics potential that reproduces the isomerization path determined with multiconfigurational perturbation theory to follow the excited-state evolution of bovine Rh. The analysis of a 140-fs trajectory provides a description of the electronic and geometrical changes that prepare the system for decay to the ground state. The data uncover a complex change of the retinal backbone that, at approximately 60-fs delay, initiates a space saving "asynchronous bicycle-pedal or crankshaft" motion, leading to a conical intersection on a 110-fs time scale. It is shown that the twisted structure achieved at decay features a momentum that provides a natural route toward the photoRh structure recently resolved by using femtosecond-stimulated Raman spectroscopy.

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Year:  2007        PMID: 17470789      PMCID: PMC1876521          DOI: 10.1073/pnas.0701732104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

Review 1.  Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs).

Authors:  D C Teller; T Okada; C A Behnke; K Palczewski; R E Stenkamp
Journal:  Biochemistry       Date:  2001-07-03       Impact factor: 3.162

2.  Probing the rhodopsin cavity with reduced retinal models at the CASPT2//CASSCF/AMBER level of theory.

Authors:  Nicolas Ferré; Massimo Olivucci
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

3.  Structural observation of the primary isomerization in vision with femtosecond-stimulated Raman.

Authors:  Philipp Kukura; David W McCamant; Sangwoon Yoon; Daniel B Wandschneider; Richard A Mathies
Journal:  Science       Date:  2005-11-11       Impact factor: 47.728

4.  Reflection on medium effects on photochemical reactivity.

Authors:  Robert S H Liu; George S Hammond
Journal:  Acc Chem Res       Date:  2005-05       Impact factor: 22.384

5.  Bicycle-pedal model for the first step in the vision process.

Authors:  A Warshel
Journal:  Nature       Date:  1976-04-22       Impact factor: 49.962

6.  Origin and consequences of steric strain in the rhodopsin binding pocket.

Authors:  Minoru Sugihara; Julia Hufen; Volker Buss
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

7.  Probing the ultrafast charge translocation of photoexcited retinal in bacteriorhodopsin.

Authors:  S Schenkl; F van Mourik; G van der Zwan; S Haacke; M Chergui
Journal:  Science       Date:  2005-08-05       Impact factor: 47.728

Review 8.  Photoisomerization in rhodopsin.

Authors:  H Kandori; Y Shichida; T Yoshizawa
Journal:  Biochemistry (Mosc)       Date:  2001-11       Impact factor: 2.487

9.  Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization.

Authors:  R González-Luque; M Garavelli; F Bernardi; M Merchán; M A Robb; M Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-15       Impact factor: 11.205

10.  Structure of the intersection space associated with ZIE photoisomerization of retinal in rhodopsin proteins.

Authors:  Annapaola Migani; Adalgisa Sinicropi; Nicolas Ferré; Alessandro Cembran; Marco Garavelli; Massimo Olivucci
Journal:  Faraday Discuss       Date:  2004       Impact factor: 4.008

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  40 in total

1.  A large geometric distortion in the first photointermediate of rhodopsin, determined by double-quantum solid-state NMR.

Authors:  Maria Concistrè; Ole G Johannessen; Neville McLean; Petra H M Bovee-Geurts; Richard C D Brown; Willem J Degrip; Malcolm H Levitt
Journal:  J Biomol NMR       Date:  2012-05-26       Impact factor: 2.835

2.  Light activation of the isomerization and deprotonation of the protonated Schiff base retinal.

Authors:  Carlos Kubli-Garfias; Karim Salazar-Salinas; Emily C Perez-Angel; Jorge M Seminario
Journal:  J Mol Model       Date:  2011-01-05       Impact factor: 1.810

3.  Physical chemistry: Seaming is believing.

Authors:  Todd J Martinez
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

4.  Local vibrational coherences drive the primary photochemistry of vision.

Authors:  Philip J M Johnson; Alexei Halpin; Takefumi Morizumi; Valentyn I Prokhorenko; Oliver P Ernst; R J Dwayne Miller
Journal:  Nat Chem       Date:  2015-11-16       Impact factor: 24.427

5.  Molecular bases for the selection of the chromophore of animal rhodopsins.

Authors:  Hoi Ling Luk; Federico Melaccio; Silvia Rinaldi; Samer Gozem; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-25       Impact factor: 11.205

6.  Anabaena sensory rhodopsin is a light-driven unidirectional rotor.

Authors:  Angela Strambi; Bo Durbeej; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

7.  Mechanisms for ultrafast nonradiative relaxation in electronically excited eumelanin constituents.

Authors:  Sheng Meng; Efthimios Kaxiras
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

8.  Photochemical reaction dynamics of the primary event of vision studied by means of a hybrid molecular simulation.

Authors:  Shigehiko Hayashi; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

Review 9.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

10.  Multistate Multiconfiguration Quantum Chemical Computation of the Two-Photon Absorption Spectra of Bovine Rhodopsin.

Authors:  Samira Gholami; Laura Pedraza-González; Xuchun Yang; Alexander A Granovsky; Ilya N Ioffe; Massimo Olivucci
Journal:  J Phys Chem Lett       Date:  2019-10-03       Impact factor: 6.475

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