Literature DB >> 10944211

Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization.

R González-Luque1, M Garavelli, F Bernardi, M Merchán, M A Robb, M Olivucci.   

Abstract

In this paper we use ab initio multiconfigurational second-order perturbation theory to establish the intrinsic photoisomerization path model of retinal chromophores. This is accomplished by computing the ground state (S(0)) and the first two singlet excited-state (S(1), S(2)) energies along the rigorously determined photoisomerization coordinate of the rhodopsin chromophore model 4-cis-gamma-methylnona-2,4,6,8-tetraeniminium cation and the bacteriorhodopsin chromophore model all-trans-hepta-2,4, 6-trieniminium cation in isolated conditions. The computed S(2) and S(1) energy profiles do not show any avoided crossing feature along the S(1) reaction path and maintain an energy gap >20 kcal small middle dotmol(-1). In addition, the analysis of the charge distribution shows that there is no qualitative change in the S(2) and S(1) electronic structure along the path. Thus, the S(1) state maintains a prevalent ionic (hole-pair) character whereas the S(2) state maintains a covalent (dot-dot) character. These results, together with the analysis of the S(1) reaction coordinate, support a two-state, two-mode model of the photoisomerization that constitutes a substantial revision of the previously proposed models.

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Year:  2000        PMID: 10944211      PMCID: PMC16872          DOI: 10.1073/pnas.97.17.9379

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

Review 1.  How color visual pigments are tuned.

Authors:  G G Kochendoerfer; S W Lin; T P Sakmar; R A Mathies
Journal:  Trends Biochem Sci       Date:  1999-08       Impact factor: 13.807

2.  The first step in vision: femtosecond isomerization of rhodopsin.

Authors:  R W Schoenlein; L A Peteanu; R A Mathies; C V Shank
Journal:  Science       Date:  1991-10-18       Impact factor: 47.728

Review 3.  Chemical dynamics in proteins: the photoisomerization of retinal in bacteriorhodopsin.

Authors:  F Gai; K C Hasson; J C McDonald; P A Anfinrud
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

4.  Microsecond atomic force sensing of protein conformational dynamics: implications for the primary light-induced events in bacteriorhodopsin.

Authors:  I Rousso; E Khachatryan; Y Gat; I Brodsky; M Ottolenghi; M Sheves; A Lewis
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

5.  Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin.

Authors:  R A Mathies; C H Brito Cruz; W T Pollard; C V Shank
Journal:  Science       Date:  1988-05-06       Impact factor: 47.728

Review 6.  The visual process: photophysics and photoisomerization of model visual pigments and the primary reaction.

Authors:  R S Becker
Journal:  Photochem Photobiol       Date:  1988-09       Impact factor: 3.421

7.  Excited-state structure and isomerization dynamics of the retinal chromophore in rhodopsin from resonance Raman intensities.

Authors:  G R Loppnow; R A Mathies
Journal:  Biophys J       Date:  1988-07       Impact factor: 4.033

8.  Picosecond and steady state, variable intensity and variable temperature emission spectroscopy of bacteriorhodopsin.

Authors:  S L Shapiro; A J Campillo; A Lewis; G J Perreault; J P Spoonhower; R K Clayton; W Stoeckenius
Journal:  Biophys J       Date:  1978-09       Impact factor: 4.033

9.  Temperature and wavelength effects on the photochemistry of rhodopsin, isorhodopsin, bacteriorhodopsin and their photoproducts.

Authors:  J B Hurley; T G Ebrey; B Honig; M Ottolenghi
Journal:  Nature       Date:  1977-12-08       Impact factor: 49.962

10.  Retinal has a highly dipolar vertically excited singlet state: implications for vision.

Authors:  R Mathies; L Stryer
Journal:  Proc Natl Acad Sci U S A       Date:  1976-07       Impact factor: 11.205

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  45 in total

1.  On the absorbance changes in the photocycle of the photoactive yellow protein: a quantum-chemical analysis.

Authors:  V Molina; M Merchán
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-03       Impact factor: 11.205

2.  The relaxation dynamics of the excited electronic states of retinal in bacteriorhodopsin by two-pump-probe femtosecond studies.

Authors:  S L Logunov; V V Volkov; M Braun; M A El-Sayed
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-10       Impact factor: 11.205

3.  The role of intersection topography in bond selectivity of cis-trans photoisomerization.

Authors:  M Ben-Nun; F Molnar; K Schulten; Todd J Martinez
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

4.  Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin.

Authors:  Jan Saam; Emad Tajkhorshid; Shigehiko Hayashi; Klaus Schulten
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

5.  Comparison of the dynamics of the primary events of bacteriorhodopsin in its trimeric and monomeric states.

Authors:  Jianping Wang; Stephan Link; Colin D Heyes; Mostafa A El-Sayed
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

6.  Structural changes during the formation of early intermediates in the bacteriorhodopsin photocycle.

Authors:  Shigehiko Hayashi; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

7.  QM/MM study of energy storage and molecular rearrangements due to the primary event in vision.

Authors:  Jose A Gascon; Victor S Batista
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

8.  Contrasting the excited-state dynamics of the photoactive yellow protein chromophore: protein versus solvent environments.

Authors:  Mikas Vengris; Michael A van der Horst; Goran Zgrablic; Ivo H M van Stokkum; Stefan Haacke; Majed Chergui; Klaas J Hellingwerf; Rienk van Grondelle; Delmar S Larsen
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

9.  Tuning the primary reaction of channelrhodopsin-2 by imidazole, pH, and site-specific mutations.

Authors:  Frank Scholz; Ernst Bamberg; Christian Bamann; Josef Wachtveitl
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

10.  Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping.

Authors:  Piero Altoè; Alessandro Cembran; Massimo Olivucci; Marco Garavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

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