Literature DB >> 21098308

Anabaena sensory rhodopsin is a light-driven unidirectional rotor.

Angela Strambi1, Bo Durbeej, Nicolas Ferré, Massimo Olivucci.   

Abstract

The implementation of multiconfigurational quantum chemistry methods into a quantum-mechanics/molecular-mechanics protocol has allowed the construction of a realistic computer model for the sensory rhodopsin of the cyanobacterium Anabaena PCC 7120. The model, which reproduces the absorption spectra of both the all-trans and 13-cis forms of the protein and their associated K and L intermediates, is employed to investigate the light-driven steps of the photochromic cycle exhibited by the protein. It is found that the photoisomerizations of the all-trans and 13-cis retinal chromophores occur through unidirectional, counterclockwise 180° rotations of the =C14-C15= moiety with respect to the Lys210-linked end of the chromophore axis. Thus, the sequential interconversions of the all-trans and 13-cis forms during a single photochromic cycle yield a complete (360°) unidirectional rotation of the =C14-C15= moiety. This finding implies that Anabaena sensory rhodopsin is a biological realization of a light-driven molecular rotor.

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Year:  2010        PMID: 21098308      PMCID: PMC3003014          DOI: 10.1073/pnas.1015085107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 A.

Authors:  Lutz Vogeley; Oleg A Sineshchekov; Vishwa D Trivedi; Jun Sasaki; John L Spudich; Hartmut Luecke
Journal:  Science       Date:  2004-09-30       Impact factor: 47.728

Review 2.  Toward intelligent molecular machines: directed motions of biological and artificial molecules and assemblies.

Authors:  Kazushi Kinbara; Takuzo Aida
Journal:  Chem Rev       Date:  2005-04       Impact factor: 60.622

3.  The color of rhodopsins at the ab initio multiconfigurational perturbation theory resolution.

Authors:  Pedro B Coto; Angela Strambi; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-07       Impact factor: 11.205

Review 4.  The art of building small: from molecular switches to molecular motors.

Authors:  Ben L Feringa
Journal:  J Org Chem       Date:  2007-07-13       Impact factor: 4.354

5.  Structure, initial excited-state relaxation, and energy storage of rhodopsin resolved at the multiconfigurational perturbation theory level.

Authors:  Tadeusz Andruniów; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-16       Impact factor: 11.205

6.  FTIR study of the photoisomerization processes in the 13-cis and all-trans forms of Anabaena sensory rhodopsin at 77 K.

Authors:  Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

7.  Properties of the emitting state of the green fluorescent protein resolved at the CASPT2//CASSCF/CHARMM level.

Authors:  Adalgisa Sinicropi; Tadeusz Andruniow; Nicolas Ferré; Riccardo Basosi; Massimo Olivucci
Journal:  J Am Chem Soc       Date:  2005-08-24       Impact factor: 15.419

8.  Tracking the excited-state time evolution of the visual pigment with multiconfigurational quantum chemistry.

Authors:  Luis Manuel Frutos; Tadeusz Andruniów; Fabrizio Santoro; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

9.  Photochromism of Anabaena sensory rhodopsin.

Authors:  Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
Journal:  J Am Chem Soc       Date:  2007-06-15       Impact factor: 15.419

10.  Structural analysis and dynamics of retinal chromophore in dark and meta I states of rhodopsin from 2H NMR of aligned membranes.

Authors:  Andrey V Struts; Gilmar F J Salgado; Katsunori Tanaka; Sonja Krane; Koji Nakanishi; Michael F Brown
Journal:  J Mol Biol       Date:  2007-03-24       Impact factor: 5.469

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  7 in total

1.  Molecular bases for the selection of the chromophore of animal rhodopsins.

Authors:  Hoi Ling Luk; Federico Melaccio; Silvia Rinaldi; Samer Gozem; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-25       Impact factor: 11.205

2.  a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement.

Authors:  Laura Pedraza-González; Luca De Vico; Marı A Del Carmen Marı N; Francesca Fanelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2019-04-12       Impact factor: 6.006

3.  A natural light-driven inward proton pump.

Authors:  Keiichi Inoue; Shota Ito; Yoshitaka Kato; Yurika Nomura; Mikihiro Shibata; Takayuki Uchihashi; Satoshi P Tsunoda; Hideki Kandori
Journal:  Nat Commun       Date:  2016-11-17       Impact factor: 14.919

Review 4.  Designing light-driven rotary molecular motors.

Authors:  Daisy R S Pooler; Anouk S Lubbe; Stefano Crespi; Ben L Feringa
Journal:  Chem Sci       Date:  2021-10-20       Impact factor: 9.825

5.  Exploring the Photophysical Properties of Molecular Systems Using Excited State Accelerated ab Initio Molecular Dynamics.

Authors:  Juan Manuel Ortiz-Sánchez; Denis Bucher; Levi C T Pierce; Phineus R L Markwick; J Andrew McCammon
Journal:  J Chem Theory Comput       Date:  2012-06-28       Impact factor: 6.006

6.  Computational and Spectroscopic Characterization of the Photocycle of an Artificial Rhodopsin.

Authors:  Madushanka Manathunga; Adam J Jenkins; Yoelvis Orozco-Gonzalez; Alireza Ghanbarpour; Babak Borhan; James H Geiger; Delmar S Larsen; Massimo Olivucci
Journal:  J Phys Chem Lett       Date:  2020-05-13       Impact factor: 6.888

7.  Azobenzene as a photoregulator covalently attached to RNA: a quantum mechanics/molecular mechanics-surface hopping dynamics study.

Authors:  Padmabati Mondal; Giovanni Granucci; Dominique Rastädter; Maurizio Persico; Irene Burghardt
Journal:  Chem Sci       Date:  2018-04-27       Impact factor: 9.825

  7 in total

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