Literature DB >> 24905782

Metabolic compensation and circadian resilience in prokaryotic cyanobacteria.

Carl Hirschie Johnson1, Martin Egli.   

Abstract

For a biological oscillator to function as a circadian pacemaker that confers a fitness advantage, its timing functions must be stable in response to environmental and metabolic fluctuations. One such stability enhancer, temperature compensation, has long been a defining characteristic of these timekeepers. However, an accurate biological timekeeper must also resist changes in metabolism, and this review suggests that temperature compensation is actually a subset of a larger phenomenon, namely metabolic compensation, which maintains the frequency of circadian oscillators in response to a host of factors that impinge on metabolism and would otherwise destabilize these clocks. The circadian system of prokaryotic cyanobacteria is an illustrative model because it is composed of transcriptional and nontranscriptional oscillators that are coupled to promote resilience. Moreover, the cyanobacterial circadian program regulates gene activity and metabolic pathways, and it can be manipulated to improve the expression of bioproducts that have practical value.

Entities:  

Keywords:  Kai; KaiABC; cell division; circadian; cyanobacteria; homeostasis; in vitro oscillator; metabolism; nontranscriptional oscillator; oscillator; robustness; stability; temperature compensation

Mesh:

Substances:

Year:  2014        PMID: 24905782      PMCID: PMC4259047          DOI: 10.1146/annurev-biochem-060713-035632

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  146 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Origin and evolution of circadian clock genes in prokaryotes.

Authors:  Volodymyr Dvornyk; Oxana Vinogradova; Eviatar Nevo
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

3.  Visualizing a circadian clock protein: crystal structure of KaiC and functional insights.

Authors:  Rekha Pattanayek; Jimin Wang; Tetsuya Mori; Yao Xu; Carl Hirschie Johnson; Martin Egli
Journal:  Mol Cell       Date:  2004-08-13       Impact factor: 17.970

Review 4.  Structural and dynamic aspects of protein clocks: how can they be so slow and stable?

Authors:  Shuji Akiyama
Journal:  Cell Mol Life Sci       Date:  2012-01-25       Impact factor: 9.261

5.  Circadian-independent cell mitosis in immortalized fibroblasts.

Authors:  Mijung Yeom; Julie S Pendergast; Yoshihiro Ohmiya; Shin Yamazaki
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

6.  A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria.

Authors:  Taeko Nishiwaki; Yoshinori Satomi; Yohko Kitayama; Kazuki Terauchi; Reiko Kiyohara; Toshifumi Takao; Takao Kondo
Journal:  EMBO J       Date:  2007-08-23       Impact factor: 11.598

7.  Circadian rhythms in rapidly dividing cyanobacteria.

Authors:  T Kondo; T Mori; N V Lebedeva; S Aoki; M Ishiura; S S Golden
Journal:  Science       Date:  1997-01-10       Impact factor: 47.728

8.  Circadian disruption leads to insulin resistance and obesity.

Authors:  Shu-qun Shi; Tasneem S Ansari; Owen P McGuinness; David H Wasserman; Carl Hirschie Johnson
Journal:  Curr Biol       Date:  2013-02-21       Impact factor: 10.834

9.  The circadian clock interacts with metabolic physiology to influence reproductive fitness.

Authors:  Kanyan Xu; Justin R DiAngelo; Michael E Hughes; John B Hogenesch; Amita Sehgal
Journal:  Cell Metab       Date:  2011-06-08       Impact factor: 27.287

10.  Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus.

Authors:  Erik R Zinser; Debbie Lindell; Zackary I Johnson; Matthias E Futschik; Claudia Steglich; Maureen L Coleman; Matthew A Wright; Trent Rector; Robert Steen; Nathan McNulty; Luke R Thompson; Sallie W Chisholm
Journal:  PLoS One       Date:  2009-04-08       Impact factor: 3.240

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  14 in total

Review 1.  Timing the day: what makes bacterial clocks tick?

Authors:  Carl Hirschie Johnson; Chi Zhao; Yao Xu; Tetsuya Mori
Journal:  Nat Rev Microbiol       Date:  2017-02-20       Impact factor: 60.633

Review 2.  Architecture and mechanism of the central gear in an ancient molecular timer.

Authors:  Martin Egli
Journal:  J R Soc Interface       Date:  2017-03       Impact factor: 4.118

Review 3.  Intricate protein-protein interactions in the cyanobacterial circadian clock.

Authors:  Martin Egli
Journal:  J Biol Chem       Date:  2014-06-16       Impact factor: 5.157

4.  Circadian Clocks: Unexpected Biochemical Cogs.

Authors:  Tetsuya Mori; Hassane Mchaourab; Carl Hirschie Johnson
Journal:  Curr Biol       Date:  2015-10-05       Impact factor: 10.834

5.  Natural changes in light interact with circadian regulation at promoters to control gene expression in cyanobacteria.

Authors:  Joseph Robert Piechura; Kapil Amarnath; Erin K O'Shea
Journal:  Elife       Date:  2017-12-14       Impact factor: 8.140

Review 6.  Transcriptional architecture of the mammalian circadian clock.

Authors:  Joseph S Takahashi
Journal:  Nat Rev Genet       Date:  2016-12-19       Impact factor: 53.242

7.  Biochemistry that times the day.

Authors:  Martin Egli; Carl H Johnson
Journal:  Biochemistry       Date:  2014-12-30       Impact factor: 3.162

Review 8.  Oxidation-reduction cycles of peroxiredoxin proteins and nontranscriptional aspects of timekeeping.

Authors:  Nathaniel P Hoyle; John S O'Neill
Journal:  Biochemistry       Date:  2014-12-30       Impact factor: 3.162

9.  Changes in primary metabolism under light and dark conditions in response to overproduction of a response regulator RpaA in the unicellular cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Hiroko Iijima; Tomokazu Shirai; Mami Okamoto; Akihiko Kondo; Masami Yokota Hirai; Takashi Osanai
Journal:  Front Microbiol       Date:  2015-08-26       Impact factor: 5.640

10.  Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803.

Authors:  Orawan Borirak; Leo J de Koning; Aniek D van der Woude; Huub C J Hoefsloot; Henk L Dekker; Winfried Roseboom; Chris G de Koster; Klaas J Hellingwerf
Journal:  Biotechnol Biofuels       Date:  2015-08-05       Impact factor: 6.040

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