Literature DB >> 1741756

Comparison of the domain-level organization of starch hydrolases and related enzymes.

H M Jespersen1, E A MacGregor, M R Sierks, B Svensson.   

Abstract

Structure-prediction and hydrophobic-cluster analysis of several starch hydrolases and related enzymes indicated the organization of eleven domain types. Most enzymes possess a catalytic (beta/alpha)8-barrel and a smaller C-terminal domain as seen in crystal structures of alpha-amylase and cyclodextrin glucanotransferase. Some also have a starch-granule-binding domain. Enzymes breaking or forming endo-alpha-1,6 linkages contain domains N-terminal to the (beta/alpha)8-barrel.

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Year:  1991        PMID： 1741756      PMCID： PMC1130598          DOI： 10.1042/bj2800051

Source DB:  PubMed          Journal:  Biochem J        ISSN： 0264-6021            Impact factor:   3.857


  40 in total

1.  Hydrophobic cluster analysis: procedures to derive structural and functional information from 2-D-representation of protein sequences.

Authors:  L Lemesle-Varloot; B Henrissat; C Gaboriaud; V Bissery; A Morgat; J P Mornon
Journal:  Biochimie       Date:  1990-08       Impact factor: 4.079

2.  Nucleotide sequence of the dextran glucosidase (dexB) gene of Streptococcus mutans.

Authors:  R R Russell; J J Ferretti
Journal:  J Gen Microbiol       Date:  1990-05

3.  Hydrophobic cluster analysis of the primary sequences of alpha-amylases.

Authors:  E Raimbaud; A Buleon; S Perez; B Henrissat
Journal:  Int J Biol Macromol       Date:  1989-08       Impact factor: 6.953

4.  Characterization of a glucoamylase G2 from Aspergillus niger.

Authors:  B Svensson; K Larsen; A Gunnarsson
Journal:  Eur J Biochem       Date:  1986-02-03

5.  Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences.

Authors:  C Gaboriaud; V Bissery; T Benchetrit; J P Mornon
Journal:  FEBS Lett       Date:  1987-11-16       Impact factor: 4.124

6.  Nucleotide sequence of the maltotetraohydrolase gene from Pseudomonas saccharophila.

Authors:  J H Zhou; T Baba; T Takano; S Kobayashi; Y Arai
Journal:  FEBS Lett       Date:  1989-09-11       Impact factor: 4.124

7.  Calcium binding in alpha-amylases: an X-ray diffraction study at 2.1-A resolution of two enzymes from Aspergillus.

Authors:  E Boel; L Brady; A M Brzozowski; Z Derewenda; G G Dodson; V J Jensen; S B Petersen; H Swift; L Thim; H F Woldike
Journal:  Biochemistry       Date:  1990-07-03       Impact factor: 3.162

8.  Primary structure of the oligo-1,6-glucosidase of Bacillus cereus ATCC7064 deduced from the nucleotide sequence of the cloned gene.

Authors:  K Watanabe; K Kitamura; H Iha; Y Suzuki
Journal:  Eur J Biochem       Date:  1990-09-24

9.  Cloning of the Schwanniomyces occidentalis glucoamylase gene (GAM1) and its expression in Saccharomyces cerevisiae.

Authors:  R J Dohmen; A W Strasser; U M Dahlems; C P Hollenberg
Journal:  Gene       Date:  1990-10-30       Impact factor: 3.688

10.  Cloning and nucleotide sequence of the gene coding for enzymatically active fragments of the Bacillus polymyxa beta-amylase.

Authors:  T Kawazu; Y Nakanishi; N Uozumi; T Sasaki; H Yamagata; N Tsukagoshi; S Udaka
Journal:  J Bacteriol       Date:  1987-04       Impact factor: 3.490
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  35 in total

1.  Identification, cloning, expression, and characterization of the extracellular acarbose-modifying glycosyltransferase, AcbD, from Actinoplanes sp. strain SE50.

Authors:  M Hemker; A Stratmann; K Goeke; W Schröder; J Lenz; W Piepersberg; H Pape
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

2.  Analysis of the active center of branching enzyme II from maize endosperm.

Authors:  T Kuriki; H Guan; M Sivak; J Preiss
Journal:  J Protein Chem       Date:  1996-04

3.  Molecular cloning and characterization of a halotolerant α-amylase from marine metagenomic library derived from Arabian Sea sediments.

Authors:  Harisree P Nair; Helvin Vincent; Rinu Madhu Puthusseri; Sarita G Bhat
Journal:  3 Biotech       Date:  2017-04-27       Impact factor: 2.406

4.  Functions of heteromeric and homomeric isoamylase-type starch-debranching enzymes in developing maize endosperm.

Authors:  Akiko Kubo; Christophe Colleoni; Jason R Dinges; Qiaohui Lin; Ryan R Lappe; Joshua G Rivenbark; Alexander J Meyer; Steven G Ball; Martha G James; Tracie A Hennen-Bierwagen; Alan M Myers
Journal:  Plant Physiol       Date:  2010-05-06       Impact factor: 8.340

Review 5.  α-Amylase: an enzyme specificity found in various families of glycoside hydrolases.

Authors:  Štefan Janeček; Birte Svensson; E Ann MacGregor
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

6.  cDNA sequence and heterologous expression of monomeric spinach pullulanase: multiple isomeric forms arise from the same polypeptide.

Authors:  A Renz; S Schikora; R Schmid; J Kossmann; E Beck
Journal:  Biochem J       Date:  1998-05-01       Impact factor: 3.857

7.  Introduction of raw starch-binding domains into Bacillus subtilis alpha-amylase by fusion with the starch-binding domain of Bacillus cyclomaltodextrin glucanotransferase.

Authors:  K Ohdan; T Kuriki; H Takata; H Kaneko; S Okada
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

Review 8.  Remarkable evolutionary relatedness among the enzymes and proteins from the α-amylase family.

Authors:  Štefan Janeček; Marek Gabriško
Journal:  Cell Mol Life Sci       Date:  2016-05-06       Impact factor: 9.261

9.  Regional sequence homologies in starch-degrading enzymes.

Authors:  B J Janse; A J Steyn; I S Pretorius
Journal:  Curr Genet       Date:  1993-11       Impact factor: 3.886

10.  Two novel, putatively cell wall-associated and glycosylphosphatidylinositol-anchored alpha-glucanotransferase enzymes of Aspergillus niger.

Authors:  R M van der Kaaij; X-L Yuan; A Franken; A F J Ram; P J Punt; M J E C van der Maarel; L Dijkhuizen
Journal:  Eukaryot Cell       Date:  2007-05-11
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