Literature DB >> 3678489

Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences.

C Gaboriaud1, V Bissery, T Benchetrit, J P Mornon.   

Abstract

A new method for comparing and aligning protein sequences is described. This method, hydrophobic cluster analysis (HCA), relies upon a two-dimensional (2D) representation of the sequences. Hydrophobic clusters are determined in this 2D pattern and then used for the sequence comparisons. The method does not require powerful computer resources and can deal with distantly related proteins, even if no 3D data are available. This is illustrated in the present report by a comparison of human haemoglobin with leghaemoglobin, a comparison of the two domains of liver rhodanese (thiosulphate sulphurtransferase) and a comparison of plastocyanin and azurin.

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Year:  1987        PMID： 3678489     DOI： 10.1016/0014-5793(87)80439-8

Source DB:  PubMed          Journal:  FEBS Lett        ISSN： 0014-5793            Impact factor:   4.124


  180 in total

1.  The third chitinase gene (chiC) of Serratia marcescens 2170 and the relationship of its product to other bacterial chitinases.

Authors:  K Suzuki; M Taiyoji; N Sugawara; N Nikaidou; B Henrissat; T Watanabe
Journal:  Biochem J       Date:  1999-11-01       Impact factor: 3.857

2.  Identification of the catalytic residues of the first family of beta(1-3)glucanosyltransferases identified in fungi.

Authors:  I Mouyna; M Monod; T Fontaine; B Henrissat; B Léchenne; J P Latgé
Journal:  Biochem J       Date:  2000-05-01       Impact factor: 3.857

3.  A gene encoding a hevein-like protein from elderberry fruits is homologous to PR-4 and class V chitinase genes.

Authors:  E J Van Damme; D Charels; S Roy; K Tierens; A Barre; J C Martins; P Rougé; F Van Leuven; M Does; W J Peumans
Journal:  Plant Physiol       Date:  1999-04       Impact factor: 8.340

4.  Characterization of the Arabidopsis lecRK-a genes: members of a superfamily encoding putative receptors with an extracellular domain homologous to legume lectins.

Authors:  C Hervé; J Serres; P Dabos; H Canut; A Barre; P Rougé; B Lescure
Journal:  Plant Mol Biol       Date:  1999-03       Impact factor: 4.076

5.  Two distinct jacalin-related lectins with a different specificity and subcellular location are major vegetative storage proteins in the bark of the black mulberry tree.

Authors:  Els J M Van Damme; Bettina Hause; Jialiang Hu; Annick Barre; Pierre Rougé; Paul Proost; Willy J Peumans
Journal:  Plant Physiol       Date:  2002-10       Impact factor: 8.340

6.  The A14-A43 heterodimer subunit in yeast RNA pol I and their relationship to Rpb4-Rpb7 pol II subunits.

Authors:  Gerald Peyroche; Erwann Levillain; Magali Siaut; Isabelle Callebaut; Patrick Schultz; Andre Sentenac; Michel Riva; Christophe Carles
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-29       Impact factor: 11.205

7.  CCAAT/Enhancer-binding protein beta DNA binding is auto-inhibited by multiple elements that also mediate association with p300/CREB-binding protein (CBP).

Authors:  Sook Lee; Maria Miller; Jon D Shuman; Peter F Johnson
Journal:  J Biol Chem       Date:  2010-05-07       Impact factor: 5.157

8.  Isolation, characterization, molecular cloning and molecular modelling of two lectins of different specificities from bluebell (Scilla campanulata) bulbs.

Authors:  L M Wright; E J Van Damme; A Barre; A K Allen; F Van Leuven; C D Reynolds; P Rouge; W J Peumans
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

9.  A new missense mutation in the L ferritin coding sequence associated with elevated levels of glycosylated ferritin in serum and absence of iron overload.

Authors:  Caroline Kannengiesser; Anne-Marie Jouanolle; Gilles Hetet; Annick Mosser; Françoise Muzeau; Dominique Henry; Edouard Bardou-Jacquet; Martine Mornet; Pierre Brissot; Yves Deugnier; Bernard Grandchamp; Carole Beaumont
Journal:  Haematologica       Date:  2009-01-27       Impact factor: 9.941

10.  The size, shape and specificity of the sugar-binding site of the jacalin-related lectins is profoundly affected by the proteolytic cleavage of the subunits.

Authors:  Corinne Houlès Astoul; Willy J Peumans; Els J M van Damme; Annick Barre; Yves Bourne; Pierre Rougé
Journal:  Biochem J       Date:  2002-11-01       Impact factor: 3.857
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