Literature DB >> 27154042

Remarkable evolutionary relatedness among the enzymes and proteins from the α-amylase family.

Štefan Janeček1,2, Marek Gabriško3.   

Abstract

The α-amylase is a ubiquitous starch hydrolase catalyzing the cleavage of the α-1,4-glucosidic bonds in an endo-fashion. Various α-amylases originating from different taxonomic sources may differ from each other significantly in their exact substrate preference and product profile. Moreover, it also seems to be clear that at least two different amino acid sequences utilizing two different catalytic machineries have evolved to execute the same α-amylolytic specificity. The two have been classified in the Cabohydrate-Active enZyme database, the CAZy, in the glycoside hydrolase (GH) families GH13 and GH57. While the former and the larger α-amylase family GH13 evidently forms the clan GH-H with the families GH70 and GH77, the latter and the smaller α-amylase family GH57 has only been predicted to maybe define a future clan with the family GH119. Sequences and several tens of enzyme specificities found throughout all three kingdoms in many taxa provide an interesting material for evolutionarily oriented studies that have demonstrated remarkable observations. This review emphasizes just the three of them: (1) a close relatedness between the plant and archaeal α-amylases from the family GH13; (2) a common ancestry in the family GH13 of animal heavy chains of heteromeric amino acid transporter rBAT and 4F2 with the microbial α-glucosidases; and (3) the unique sequence features in the primary structures of amylomaltases from the genus Borrelia from the family GH77. Although the three examples cannot represent an exhaustive list of exceptional topics worth to be interested in, they may demonstrate the importance these enzymes possess in the overall scientific context.

Entities:  

Keywords:  Evolutionary relatedness; Family GH77 amylomaltases of borrelian origin; Heavy-chains of rBAT and 4F2 proteins; Plant and archaeal α-amylases; α-Amylase family GH13

Mesh:

Substances:

Year:  2016        PMID: 27154042     DOI: 10.1007/s00018-016-2246-6

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  213 in total

1.  Structural elements responsible for the glucosidic linkage-selectivity of a glycoside hydrolase family 13 exo-glucosidase.

Authors:  Wataru Saburi; Hiroaki Rachi-Otsuka; Hironori Hondoh; Masayuki Okuyama; Haruhide Mori; Atsuo Kimura
Journal:  FEBS Lett       Date:  2015-02-26       Impact factor: 4.124

2.  Crystal structure of AmyA lacks acidic surface and provide insights into protein stability at poly-extreme condition.

Authors:  Neelamegam Sivakumar; Nan Li; Julian W Tang; Bharat K C Patel; Kunchithapadam Swaminathan
Journal:  FEBS Lett       Date:  2006-04-19       Impact factor: 4.124

3.  The plastidial glucan, water dikinase (GWD) catalyses multiple phosphotransfer reactions.

Authors:  Mahdi Hejazi; Martin Steup; Joerg Fettke
Journal:  FEBS J       Date:  2012-04-25       Impact factor: 5.542

4.  In silico identification of catalytic residues and domain fold of the family GH119 sharing the catalytic machinery with the α-amylase family GH57.

Authors:  Stefan Janeček; Andrea Kuchtová
Journal:  FEBS Lett       Date:  2012-07-17       Impact factor: 4.124

5.  Alpha-amylase structure and activity.

Authors:  E A MacGregor
Journal:  J Protein Chem       Date:  1988-08

6.  A circularly permuted alpha-amylase-type alpha/beta-barrel structure in glucan-synthesizing glucosyltransferases.

Authors:  E A MacGregor; H M Jespersen; B Svensson
Journal:  FEBS Lett       Date:  1996-01-15       Impact factor: 4.124

7.  Isolation and sequence analysis of a barley alpha-amylase cDNA clone.

Authors:  J C Rogers; C Milliman
Journal:  J Biol Chem       Date:  1983-07-10       Impact factor: 5.157

8.  Cloning and chromosomal localization of a human kidney cDNA involved in cystine, dibasic, and neutral amino acid transport.

Authors:  W S Lee; R G Wells; R V Sabbag; T K Mohandas; M A Hediger
Journal:  J Clin Invest       Date:  1993-05       Impact factor: 14.808

9.  Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase.

Authors:  Hironori Hondoh; Takashi Kuriki; Yoshiki Matsuura
Journal:  J Mol Biol       Date:  2003-02-07       Impact factor: 5.469

10.  Close relationship of a novel Flavobacteriaceae α-amylase with archaeal α-amylases and good potentials for industrial applications.

Authors:  Chunfang Li; Miaofen Du; Bin Cheng; Lushan Wang; Xinqiang Liu; Cuiqing Ma; Chunyu Yang; Ping Xu
Journal:  Biotechnol Biofuels       Date:  2014-01-31       Impact factor: 6.040

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  20 in total

Review 1.  Aspects and Recent Trends in Microbial α-Amylase: a Review.

Authors:  Jai Shankar Paul; Nisha Gupta; Esmil Beliya; Shubhra Tiwari; Shailesh Kumar Jadhav
Journal:  Appl Biochem Biotechnol       Date:  2021-03-14       Impact factor: 2.926

2.  Structural basis for amino acid exchange by a human heteromeric amino acid transporter.

Authors:  Di Wu; Tamara N Grund; Sonja Welsch; Deryck J Mills; Max Michel; Schara Safarian; Hartmut Michel
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-17       Impact factor: 11.205

3.  Family-wide Structural Characterization and Genomic Comparisons Decode the Diversity-oriented Biosynthesis of Thalassospiramides by Marine Proteobacteria.

Authors:  Weipeng Zhang; Liang Lu; Qiliang Lai; Beika Zhu; Zhongrui Li; Ying Xu; Zongze Shao; Karl Herrup; Bradley S Moore; Avena C Ross; Pei-Yuan Qian
Journal:  J Biol Chem       Date:  2016-11-14       Impact factor: 5.157

4.  A new GH13 subfamily represented by the α-amylase from the halophilic archaeon Haloarcula hispanica.

Authors:  Štefan Janeček; Barbora Zámocká
Journal:  Extremophiles       Date:  2019-11-16       Impact factor: 2.395

5.  Revealing the difference of α-amylase and CYP6AE76 gene between polyphagous Conogethes punctiferalis and oligophagous C. pinicolalis by multiple-omics and molecular biological technique.

Authors:  Dapeng Jing; Sivaprasath Prabu; Tiantao Zhang; Shuxiong Bai; Kanglai He; Yongjun Zhang; Zhenying Wang
Journal:  BMC Genomics       Date:  2022-07-19       Impact factor: 4.547

Review 6.  Structural and functional adaptation in extremophilic microbial α-amylases.

Authors:  Aziz Ahmad; Rajesh Mishra
Journal:  Biophys Rev       Date:  2022-01-24

7.  Molecular and Functional Study of a Branching Sucrase-Like Glucansucrase Reveals an Evolutionary Intermediate between Two Subfamilies of the GH70 Enzymes.

Authors:  Minghui Yan; Bing-Hua Wang; Xiaofen Xu; Peng Chang; Feng Hang; Zhengjun Wu; Chunping You; Zhenmin Liu
Journal:  Appl Environ Microbiol       Date:  2018-04-16       Impact factor: 4.792

8.  A putative novel starch-binding domain revealed by in silico analysis of the N-terminal domain in bacterial amylomaltases from the family GH77.

Authors:  Filip Mareček; Marie Sofie Møller; Birte Svensson; Štefan Janeček
Journal:  3 Biotech       Date:  2021-04-21       Impact factor: 2.406

9.  Recombinant expression, purification, and characterization of an α-amylase from Massilia timonae.

Authors:  Bruna Yuki Tagomori; Fabiane Cristina Dos Santos; Ione Parra Barbosa-Tessmann
Journal:  3 Biotech       Date:  2021-01-02       Impact factor: 2.406

10.  4,3-α-Glucanotransferase, a novel reaction specificity in glycoside hydrolase family 70 and clan GH-H.

Authors:  Joana Gangoiti; Sander S van Leeuwen; Gerrit J Gerwig; Stéphane Duboux; Christina Vafiadi; Tjaard Pijning; Lubbert Dijkhuizen
Journal:  Sci Rep       Date:  2017-01-06       Impact factor: 4.379

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