Literature DB >> 17389391

Reconfiguration of yeast 40S ribosomal subunit domains by the translation initiation multifactor complex.

Robert J C Gilbert1, Yulya Gordiyenko, Tobias von der Haar, Andreas F-P Sonnen, Gregor Hofmann, Maria Nardelli, David I Stuart, John E G McCarthy.   

Abstract

In the process of protein synthesis, the small (40S) subunit of the eukaryotic ribosome is recruited to the capped 5' end of the mRNA, from which point it scans along the 5' untranslated region in search of a start codon. However, the 40S subunit alone is not capable of functional association with cellular mRNA species; it has to be prepared for the recruitment and scanning steps by interactions with a group of eukaryotic initiation factors (eIFs). In budding yeast, an important subset of these factors (1, 2, 3, and 5) can form a multifactor complex (MFC). Here, we describe cryo-EM reconstructions of the 40S subunit, of the MFC, and of 40S complexes with MFC factors plus eIF1A. These studies reveal the positioning of the core MFC on the 40S subunit, and show how eIF-binding induces mobility in the head and platform and reconfigures the head-platform-body relationship. This is expected to increase the accessibility of the mRNA channel, thus enabling the 40S subunit to convert to a recruitment-competent state.

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Year:  2007        PMID: 17389391      PMCID: PMC1832216          DOI: 10.1073/pnas.0606880104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

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Authors:  S Srivastava; A Verschoor; J Frank
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Review 5.  MRC image processing programs.

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6.  The yeast eukaryotic initiation factor 4G (eIF4G) HEAT domain interacts with eIF1 and eIF5 and is involved in stringent AUG selection.

Authors:  Hui He; Tobias von der Haar; C Ranjit Singh; Miki Ii; Bin Li; Alan G Hinnebusch; John E G McCarthy; Katsura Asano
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

7.  Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

Authors:  Christian M T Spahn; Eric Jan; Anke Mulder; Robert A Grassucci; Peter Sarnow; Joachim Frank
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8.  Efficient incorporation of eukaryotic initiation factor 1 into the multifactor complex is critical for formation of functional ribosomal preinitiation complexes in vivo.

Authors:  Chingakham Ranjit Singh; Hui He; Miki Ii; Yasufumi Yamamoto; Katsura Asano
Journal:  J Biol Chem       Date:  2004-05-15       Impact factor: 5.157

9.  Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity.

Authors:  Byung-Sik Shin; David Maag; Antonina Roll-Mecak; M Shamsul Arefin; Stephen K Burley; Jon R Lorsch; Thomas E Dever
Journal:  Cell       Date:  2002-12-27       Impact factor: 41.582

Review 10.  Pushing the limits of the scanning mechanism for initiation of translation.

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  8 in total

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Review 2.  The small subunit processome in ribosome biogenesis—progress and prospects.

Authors:  Kathleen R Phipps; J Michael Charette; Susan J Baserga
Journal:  Wiley Interdiscip Rev RNA       Date:  2011 Jan-Feb       Impact factor: 9.957

3.  Heterogeneity of large macromolecular complexes revealed by 3D cryo-EM variance analysis.

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Journal:  Structure       Date:  2008-12-10       Impact factor: 5.006

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Review 5.  The eukaryotic ribosome: current status and challenges.

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6.  Direct observation of distinct A/P hybrid-state tRNAs in translocating ribosomes.

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Review 7.  Cap-dependent translation initiation factor eIF4E: an emerging anticancer drug target.

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8.  FitEM2EM--tools for low resolution study of macromolecular assembly and dynamics.

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Journal:  PLoS One       Date:  2008-10-31       Impact factor: 3.240

  8 in total

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