Literature DB >> 21318072

The small subunit processome in ribosome biogenesis—progress and prospects.

Kathleen R Phipps1, J Michael Charette, Susan J Baserga.   

Abstract

The small subunit (SSU) processome is a 2.2-MDa ribonucleoprotein complex involved in the processing, assembly, and maturation of the SSU of eukaryotic ribosomes. The identities of many of the factors involved in SSU biogenesis have been elucidated over the past 40 years. However, as our understanding increases, so do the number of questions about the nature of this complicated process. Cataloging the components is the first step toward understanding the molecular workings of a system. This review will focus on how identifying components of ribosome biogenesis has led to the knowledge of how these factors, protein and RNA alike, associate with one another into subcomplexes, with a concentration on the small ribosomal subunit. We will also explore how this knowledge of subcomplex assembly has informed our understanding of the workings of the ribosome synthesis system as a whole.

Entities:  

Keywords:  RNA chaperone; RNA processing; SSU processome; U3 snoRNA; Utp; ribosomal SSU

Mesh:

Substances:

Year:  2011        PMID: 21318072      PMCID: PMC3035417          DOI: 10.1002/wrna.57

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  189 in total

1.  Yeast NSR1 protein that has structural similarity to mammalian nucleolin is involved in pre-rRNA processing.

Authors:  K Kondo; M Inouye
Journal:  J Biol Chem       Date:  1992-08-15       Impact factor: 5.157

2.  Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association.

Authors:  J Venema; H R Vos; A W Faber; W J van Venrooij; H A Raué
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

3.  Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis.

Authors:  E Billy; T Wegierski; F Nasr; W Filipowicz
Journal:  EMBO J       Date:  2000-05-02       Impact factor: 11.598

4.  A comprehensive two-hybrid analysis to explore the yeast protein interactome.

Authors:  T Ito; T Chiba; R Ozawa; M Yoshida; M Hattori; Y Sakaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

5.  The terminal balls characteristic of eukaryotic rRNA transcription units in chromatin spreads are rRNA processing complexes.

Authors:  E B Mougey; M O'Reilly; Y Osheim; O L Miller; A Beyer; B Sollner-Webb
Journal:  Genes Dev       Date:  1993-08       Impact factor: 11.361

6.  Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis.

Authors:  J P Morrissey; D Tollervey
Journal:  Mol Cell Biol       Date:  1993-04       Impact factor: 4.272

7.  NSR1 is required for pre-rRNA processing and for the proper maintenance of steady-state levels of ribosomal subunits.

Authors:  W C Lee; D Zabetakis; T Mélèse
Journal:  Mol Cell Biol       Date:  1992-09       Impact factor: 4.272

8.  Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA.

Authors:  M Beltrame; D Tollervey
Journal:  EMBO J       Date:  1992-04       Impact factor: 11.598

9.  The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast.

Authors:  D Tollervey; H Lehtonen; M Carmo-Fonseca; E C Hurt
Journal:  EMBO J       Date:  1991-03       Impact factor: 11.598

10.  A U3 snoRNP protein with homology to splicing factor PRP4 and G beta domains is required for ribosomal RNA processing.

Authors:  R Jansen; D Tollervey; E C Hurt
Journal:  EMBO J       Date:  1993-06       Impact factor: 11.598

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  95 in total

1.  Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575.

Authors:  Sabine Figaro; Ludivine Wacheul; Stéphanie Schillewaert; Marc Graille; Emmeline Huvelle; Rémi Mongeard; Christiane Zorbas; Denis L J Lafontaine; Valérie Heurgué-Hamard
Journal:  Mol Cell Biol       Date:  2012-04-09       Impact factor: 4.272

2.  Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis.

Authors:  Malik Chaker-Margot; Mirjam Hunziker; Jonas Barandun; Brian D Dill; Sebastian Klinge
Journal:  Nat Struct Mol Biol       Date:  2015-10-19       Impact factor: 15.369

Review 3.  Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors.

Authors:  Julio Sáez-Vásquez; Michel Delseny
Journal:  Plant Cell       Date:  2019-06-25       Impact factor: 11.277

Review 4.  A census of human RNA-binding proteins.

Authors:  Stefanie Gerstberger; Markus Hafner; Thomas Tuschl
Journal:  Nat Rev Genet       Date:  2014-11-04       Impact factor: 53.242

Review 5.  An emerging role for the ribosome as a nexus for post-translational modifications.

Authors:  Deniz Simsek; Maria Barna
Journal:  Curr Opin Cell Biol       Date:  2017-04-23       Impact factor: 8.382

6.  Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast.

Authors:  Sanduo Zheng; Pengfei Lan; Ximing Liu; Keqiong Ye
Journal:  J Biol Chem       Date:  2014-07-02       Impact factor: 5.157

Review 7.  DExD/H-box RNA helicases in ribosome biogenesis.

Authors:  Roman Martin; Annika U Straub; Carmen Doebele; Markus T Bohnsack
Journal:  RNA Biol       Date:  2012-08-24       Impact factor: 4.652

8.  Structural and functional studies of Bud23-Trm112 reveal 18S rRNA N7-G1575 methylation occurs on late 40S precursor ribosomes.

Authors:  Juliette Létoquart; Emmeline Huvelle; Ludivine Wacheul; Gabrielle Bourgeois; Christiane Zorbas; Marc Graille; Valérie Heurgué-Hamard; Denis L J Lafontaine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

9.  Ribosomal RNA Biogenesis and Its Response to Chilling Stress in Oryza sativa.

Authors:  Runlai Hang; Zhen Wang; Xian Deng; Chunyan Liu; Bin Yan; Chao Yang; Xianwei Song; Beixin Mo; Xiaofeng Cao
Journal:  Plant Physiol       Date:  2018-03-19       Impact factor: 8.340

10.  A conserved deubiquitinating enzyme controls cell growth by regulating RNA polymerase I stability.

Authors:  Lauren A Richardson; Benjamin J Reed; J Michael Charette; Emily F Freed; Eric K Fredrickson; Melissa N Locke; Susan J Baserga; Richard G Gardner
Journal:  Cell Rep       Date:  2012-08-16       Impact factor: 9.423

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