Literature DB >> 12351826

On the fitting of model electron densities into EM reconstructions: a reciprocal-space formulation.

J Navaza1, J Lepault, F A Rey, C Alvarez-Rúa, J Borge.   

Abstract

A fast method for fitting model electron densities into EM reconstructions is presented. The methodology was inspired by the molecular-replacement technique, adapted to take into account phase information and the symmetry imposed during the EM reconstruction. Calculations are performed in reciprocal space, which enables the selection of large volumes of the EM maps, thus avoiding the bias introduced when defining the boundaries of the target density.

Mesh:

Year:  2002        PMID: 12351826     DOI: 10.1107/s0907444902013707

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  67 in total

1.  On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models.

Authors:  Marc Delarue; Philippe Dumas
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

2.  Normal mode-based fitting of atomic structure into electron density maps: application to sarcoplasmic reticulum Ca-ATPase.

Authors:  Konrad Hinsen; Nathalie Reuter; Jorge Navaza; David L Stokes; Jean-Jacques Lacapère
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

3.  Crystal structure of bacteriophage SPP1 distal tail protein (gp19.1): a baseplate hub paradigm in gram-positive infecting phages.

Authors:  David Veesler; Gautier Robin; Julie Lichière; Isabelle Auzat; Paulo Tavares; Patrick Bron; Valérie Campanacci; Christian Cambillau
Journal:  J Biol Chem       Date:  2010-09-15       Impact factor: 5.157

4.  Crystal structure of the entire ectodomain of gp130: insights into the molecular assembly of the tall cytokine receptor complexes.

Authors:  Yibin Xu; Nadia J Kershaw; Cindy S Luo; Priscilla Soo; Michael J Pocock; Peter E Czabotar; Douglas J Hilton; Nicos A Nicola; Thomas P J Garrett; Jian-Guo Zhang
Journal:  J Biol Chem       Date:  2010-05-20       Impact factor: 5.157

5.  Molecular rearrangements involved in the capsid shell maturation of bacteriophage T7.

Authors:  Alina Ionel; Javier A Velázquez-Muriel; Daniel Luque; Ana Cuervo; José R Castón; José M Valpuesta; Jaime Martín-Benito; José L Carrascosa
Journal:  J Biol Chem       Date:  2010-10-20       Impact factor: 5.157

6.  The structure of a putative scaffolding protein of immature poxvirus particles as determined by electron microscopy suggests similarity with capsid proteins of large icosahedral DNA viruses.

Authors:  Jae-Kyung Hyun; Fasséli Coulibaly; Adrian P Turner; Edward N Baker; Andrew A Mercer; Alok K Mitra
Journal:  J Virol       Date:  2007-08-01       Impact factor: 5.103

7.  Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions.

Authors:  Grigore D Pintilie; Junjie Zhang; Thomas D Goddard; Wah Chiu; David C Gossard
Journal:  J Struct Biol       Date:  2010-03-23       Impact factor: 2.867

8.  Structural rearrangements in tubulin following microtubule formation.

Authors:  Angelika Krebs; Kenneth N Goldie; Andreas Hoenger
Journal:  EMBO Rep       Date:  2005-03       Impact factor: 8.807

9.  The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity.

Authors:  Andrei L Okorokov; Michael B Sherman; Celia Plisson; Vera Grinkevich; Kristmundur Sigmundsson; Galina Selivanova; Jo Milner; Elena V Orlova
Journal:  EMBO J       Date:  2006-10-19       Impact factor: 11.598

10.  Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating.

Authors:  Sophie Lhuillier; Matthieu Gallopin; Bernard Gilquin; Sandrine Brasilès; Nathalie Lancelot; Guillaume Letellier; Mathilde Gilles; Guillaume Dethan; Elena V Orlova; Joël Couprie; Paulo Tavares; Sophie Zinn-Justin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-11       Impact factor: 11.205

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