Literature DB >> 1738607

Processing of chimeric introns in dicot plants: evidence for a close cooperation between 5' and 3' splice sites.

E Waigmann1, A Barta.   

Abstract

Splice sites of vertebrate introns are generally not recognized in plant cells. Several lines of evidences have led to the proposal that the mechanism of 3' splice site selection differs in plants and animals (K. Wiebauer, J.J. Herrero, and W. Filipowicz, Mol. Cell. Biol. 8:2042-2051, 1988). To gain a better insight into the mechanistic differences between plant and animal splicing, we constructed chimeric introns consisting partly of dicotyledonous plant and partly of animal intron sequences. Splicing of these chimeric introns was analyzed in transiently transfected tobacco protoplasts. The results show that there are no principal sequence or structural differences between the 3' splice regions of plants and animals. Furthermore, evidence is provided that cooperation between 5' and 3' splice sites takes place and influences their mutual selection.

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Year:  1992        PMID: 1738607      PMCID: PMC310328          DOI: 10.1093/nar/20.1.75

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  26 in total

1.  Molecular analysis of eight U1 RNA gene candidates from tomato that could potentially be transcribed into U1 RNA sequence variants differing from each other in similar regions of secondary structure.

Authors:  S Abel; T Kiss; F Solymosy
Journal:  Nucleic Acids Res       Date:  1989-08-11       Impact factor: 16.971

2.  The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing.

Authors:  G J Goodall; W Filipowicz
Journal:  Cell       Date:  1989-08-11       Impact factor: 41.582

3.  Role of the branch site/3'-splice site region in adenovirus-2 E1A pre-mRNA alternative splicing: evidence for 5'- and 3'-splice site co-operation.

Authors:  P J Ulfendahl; J P Kreivi; G Akusjärvi
Journal:  Nucleic Acids Res       Date:  1989-02-11       Impact factor: 16.971

4.  A catalogue of splice junction and putative branch point sequences from plant introns.

Authors:  J W Brown
Journal:  Nucleic Acids Res       Date:  1986-12-22       Impact factor: 16.971

5.  Assembly of pre-mRNA splicing complex is cap dependent.

Authors:  E Patzelt; E Thalmann; K Hartmuth; D Blaas; E Kuechler
Journal:  Nucleic Acids Res       Date:  1987-02-25       Impact factor: 16.971

6.  Splicing of messenger RNA precursors.

Authors:  P A Sharp
Journal:  Science       Date:  1987-02-13       Impact factor: 47.728

7.  Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.

Authors:  D A Melton; P A Krieg; M R Rebagliati; T Maniatis; K Zinn; M R Green
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

8.  Structure and expression of the U5 snRNA gene of Arabidopsis thaliana. Conserved upstream sequence elements in plant U-RNA genes.

Authors:  P Vankan; D Edoh; W Filipowicz
Journal:  Nucleic Acids Res       Date:  1988-11-25       Impact factor: 16.971

9.  Nuclear pre-mRNA processing in plants: distinct modes of 3'-splice-site selection in plants and animals.

Authors:  K Wiebauer; J J Herrero; W Filipowicz
Journal:  Mol Cell Biol       Date:  1988-05       Impact factor: 4.272

10.  Regulation of tissue-specific alternative splicing: exon-specific cis-elements govern the splicing of leukocyte common antigen pre-mRNA.

Authors:  M Streuli; H Saito
Journal:  EMBO J       Date:  1989-03       Impact factor: 11.598

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  11 in total

1.  Efficient splicing of an AU-rich antisense intron sequence.

Authors:  C G Simpson; J W Brown
Journal:  Plant Mol Biol       Date:  1993-01       Impact factor: 4.076

2.  Identification of protein-coding regions in Arabidopsis thaliana genome based on quadratic discriminant analysis.

Authors:  M Q Zhang
Journal:  Plant Mol Biol       Date:  1998-07       Impact factor: 4.076

Review 3.  Splicing of precursors to mRNA in higher plants: mechanism, regulation and sub-nuclear organisation of the spliceosomal machinery.

Authors:  G G Simpson; W Filipowicz
Journal:  Plant Mol Biol       Date:  1996-10       Impact factor: 4.076

4.  Enhanced expression in tobacco of the gene encoding green fluorescent protein by modification of its codon usage.

Authors:  G J Rouwendal; O Mendes; E J Wolbert; A Douwe de Boer
Journal:  Plant Mol Biol       Date:  1997-04       Impact factor: 4.076

5.  Analysis of splice donor and acceptor site function in a transposable gene trap derived from the maize element Activator.

Authors:  L Nussaume; K Harrison; V Klimyuk; R Martienssen; V Sundaresan; J D Jones
Journal:  Mol Gen Genet       Date:  1995-11-01

6.  Characterization of a novel arginine/serine-rich splicing factor in Arabidopsis.

Authors:  S Lopato; E Waigmann; A Barta
Journal:  Plant Cell       Date:  1996-12       Impact factor: 11.277

7.  Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

Authors:  S M Hebsgaard; P G Korning; N Tolstrup; J Engelbrecht; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

8.  The AG dinucleotide terminating introns is important but not always required for pre-mRNA splicing in the maize endosperm

Authors: 
Journal:  Plant Physiol       Date:  1999-05       Impact factor: 8.340

9.  Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties.

Authors:  H Frances; J Bligh; P D Larkin; P S Roach; C A Jones; H Fu; W D Park
Journal:  Plant Mol Biol       Date:  1998-10       Impact factor: 4.076

10.  Characterization of intronic uridine-rich sequence elements acting as possible targets for nuclear proteins during pre-mRNA splicing in Nicotiana plumbaginifolia.

Authors:  M Gniadkowski; M Hemmings-Mieszczak; U Klahre; H X Liu; W Filipowicz
Journal:  Nucleic Acids Res       Date:  1996-02-15       Impact factor: 16.971

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