Literature DB >> 3808952

A catalogue of splice junction and putative branch point sequences from plant introns.

J W Brown.   

Abstract

Splice junction and possible branch point sequences have been collected from 177 plant introns. Consensus sequences for the 5' and 3' splice junctions and for possible branch points have been derived. The splice junction consensus sequences were virtually identical to those of animal introns except that the polypyrimidine stretch at the 3' splice junction was less pronounced in the plant introns. A search for possible branch points with sequences related to the yeast, vertebrate and fungal consensus sequences revealed a similar sequence in plant introns.

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Year:  1986        PMID： 3808952      PMCID： PMC341320          DOI： 10.1093/nar/14.24.9549

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  50 in total

1.  Complete nucleotide sequence of a French bean storage protein gene: Phaseolin.

Authors:  J L Slightom; S M Sun; T C Hall
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

2.  Characterization of the branch site in lariat RNAs produced by splicing of mRNA precursors.

Authors:  M M Konarska; P J Grabowski; R A Padgett; P A Sharp
Journal:  Nature       Date:  1985 Feb 14-20       Impact factor: 49.962

3.  Cloning and structural analysis of DNA encoding an A2B1a subunit of glycinin.

Authors:  Y A Marco; V H Thanh; N E Tumer; B J Scallon; N C Nielsen
Journal:  J Biol Chem       Date:  1984-11-10       Impact factor: 5.157

4.  Splicing of in vitro synthesized messenger RNA precursors in HeLa cell extracts.

Authors:  N Hernandez; W Keller
Journal:  Cell       Date:  1983-11       Impact factor: 41.582

5.  The complete nucleotide sequence of a legumin gene from pea (Pisum sativum L.).

Authors:  G W Lycett; R R Croy; A H Shirsat; D Boulter
Journal:  Nucleic Acids Res       Date:  1984-06-11       Impact factor: 16.971

6.  Are snRNPs involved in splicing?

Authors:  M R Lerner; J A Boyle; S M Mount; S L Wolin; J A Steitz
Journal:  Nature       Date:  1980-01-10       Impact factor: 49.962

7.  Complete nucleotide sequence of a soybean actin gene.

Authors:  D M Shah; R C Hightower; R B Meagher
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

8.  Normal and mutant human beta-globin pre-mRNAs are faithfully and efficiently spliced in vitro.

Authors:  A R Krainer; T Maniatis; B Ruskin; M R Green
Journal:  Cell       Date:  1984-04       Impact factor: 41.582

9.  Intron sequences involved in lariat formation during pre-mRNA splicing.

Authors:  R Reed; T Maniatis
Journal:  Cell       Date:  1985-05       Impact factor: 41.582

10.  The legumin gene family: structure of a B type gene of Vicia faba and a possible legumin gene specific regulatory element.

Authors:  H Bäumlein; U Wobus; J Pustell; F C Kafatos
Journal:  Nucleic Acids Res       Date:  1986-03-25       Impact factor: 16.971
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  173 in total

1.  A splice site mutant of maize activates cryptic splice sites, elicits intron inclusion and exon exclusion, and permits branch point elucidation.

Authors:  S Lal; J H Choi; J R Shaw; L C Hannah
Journal:  Plant Physiol       Date:  1999-10       Impact factor: 8.340

2.  The phenylalanine ammonia-lyase gene family in raspberry. Structure, expression, and evolution.

Authors:  A Kumar; B E Ellis
Journal:  Plant Physiol       Date:  2001-09       Impact factor: 8.340

3.  Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon.

Authors:  Craig G Simpson; Graham Thow; Gillian P Clark; S Nikki Jennings; Jenny A Watters; John W S Brown
Journal:  RNA       Date:  2002-01       Impact factor: 4.942

4.  Introns and their positions affect the translational activity of mRNA in plant cells.

Authors:  V Bourdon; A Harvey; D M Lonsdale
Journal:  EMBO Rep       Date:  2001-05       Impact factor: 8.807

5.  A branch point consensus from Arabidopsis found by non-circular analysis allows for better prediction of acceptor sites.

Authors:  N Tolstrup; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1997-08-01       Impact factor: 16.971

6.  Gene induction of stilbene biosynthesis in Scots pine in response to ozone treatment, wounding, and fungal infection.

Authors:  H Chiron; A Drouet; F Lieutier; H D Payer; D Ernst; H Sandermann
Journal:  Plant Physiol       Date:  2000-10       Impact factor: 8.340

7.  Expression patterns of two tobacco isoflavone reductase-like genes and their possible roles in secondary metabolism in tobacco.

Authors:  Tsubasa Shoji; Robert Winz; Tadayuki Iwase; Keiji Nakajima; Yasuyuki Yamada; Takashi Hashimoto
Journal:  Plant Mol Biol       Date:  2002-10       Impact factor: 4.076

8.  Structural and functional analysis of the Bz2 locus of Zea mays: characterization of overlapping transcripts.

Authors:  G Schmitz; K Theres
Journal:  Mol Gen Genet       Date:  1992-05

9.  Organization and structure of the 1-aminocyclopropane-1-carboxylate oxidase gene family from Petunia hybrida.

Authors:  X Tang; H Wang; A S Brandt; W R Woodson
Journal:  Plant Mol Biol       Date:  1993-12       Impact factor: 4.076

10.  Bronze-2 Gene Expression and Intron Splicing Patterns in Cells and Tissues of Zea mays L.

Authors:  J Nash; V Walbot
Journal:  Plant Physiol       Date:  1992-09       Impact factor: 8.340
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