Literature DB >> 2758463

The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing.

G J Goodall1, W Filipowicz.   

Abstract

Plant cells do not in general process the introns of transcripts expressed from introduced vertebrate genes. By studying the processing of model introns in transfected plant protoplasts, we have investigated the special requirements for intron recognition by plant cells. Our results indicate that the requirements for intron recognition in plants are different from those of both metazoa and yeast. A synthetic intron of arbitrary sequence but incorporating splice site consensus sequences and a high proportion of U and A nucleotides, a characteristic feature of plant introns, was efficiently spliced in protoplasts. We have studied the effects of various sequence alterations and conclude that AU-rich sequences are necessary for intron recognition. In addition, we find that the criteria for branch site selection are relaxed, as they are in vertebrates, but a polypyrimidine tract is not necessary.

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Year:  1989        PMID: 2758463     DOI: 10.1016/0092-8674(89)90428-5

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  194 in total

1.  A splice site mutant of maize activates cryptic splice sites, elicits intron inclusion and exon exclusion, and permits branch point elucidation.

Authors:  S Lal; J H Choi; J R Shaw; L C Hannah
Journal:  Plant Physiol       Date:  1999-10       Impact factor: 8.340

2.  UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation.

Authors:  M H Lambermon; G G Simpson; D A Wieczorek Kirk; M Hemmings-Mieszczak; U Klahre; W Filipowicz
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

3.  Requirements for mini-exon inclusion in potato invertase mRNAs provides evidence for exon-scanning interactions in plants.

Authors:  C G Simpson; P E Hedley; J A Watters; G P Clark; C McQuade; G C Machray; J W Brown
Journal:  RNA       Date:  2000-03       Impact factor: 4.942

4.  Test of the combinatorial model of intron recognition in a native maize gene.

Authors:  M J Latijnhouwers; C F Pairoba; V Brendel; V Walbot; J C Carle-Urisote
Journal:  Plant Mol Biol       Date:  1999-11       Impact factor: 4.076

5.  Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon.

Authors:  Craig G Simpson; Graham Thow; Gillian P Clark; S Nikki Jennings; Jenny A Watters; John W S Brown
Journal:  RNA       Date:  2002-01       Impact factor: 4.942

6.  A computational analysis of sequence features involved in recognition of short introns.

Authors:  L P Lim; C B Burge
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

7.  Requirements for intron-mediated enhancement of gene expression in Arabidopsis.

Authors:  Alan B Rose
Journal:  RNA       Date:  2002-11       Impact factor: 4.942

8.  The maize genome contains a helitron insertion.

Authors:  Shailesh K Lal; Michael J Giroux; Volker Brendel; C Eduardo Vallejos; L Curtis Hannah
Journal:  Plant Cell       Date:  2003-02       Impact factor: 11.277

9.  Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene.

Authors:  Ying Chen; Wolfgang Stephan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-12       Impact factor: 11.205

10.  AUUUA is not sufficient to promote poly(A) shortening and degradation of an mRNA: the functional sequence within AU-rich elements may be UUAUUUA(U/A)(U/A).

Authors:  C A Lagnado; C Y Brown; G J Goodall
Journal:  Mol Cell Biol       Date:  1994-12       Impact factor: 4.272

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