Literature DB >> 9678575

Identification of protein-coding regions in Arabidopsis thaliana genome based on quadratic discriminant analysis.

M Q Zhang1.   

Abstract

A new method (MZEF) for predicting internal coding exons in genomic DNA sequences has been developed. This method is based on a prediction algorithm that uses the quadratic discriminant function for multivariate statistical pattern recognition. With improved feature measures, an Arabidopsis thaliana-specific implementation of MZEF is completed and made available to the plant genome community.

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Year:  1998        PMID： 9678575     DOI： 10.1023/a:1006023912378

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  16 in total

1.  A branch point consensus from Arabidopsis found by non-circular analysis allows for better prediction of acceptor sites.

Authors:  N Tolstrup; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1997-08-01       Impact factor: 16.971

2.  Processing of chimeric introns in dicot plants: evidence for a close cooperation between 5' and 3' splice sites.

Authors:  E Waigmann; A Barta
Journal:  Nucleic Acids Res       Date:  1992-01-11       Impact factor: 16.971

3.  First plant genome sequencing planned.

Authors:  D Kramer
Journal:  Nature       Date:  1996-09-19       Impact factor: 49.962

Review 4.  Computational methods for the identification of genes in vertebrate genomic sequences.

Authors:  J M Claverie
Journal:  Hum Mol Genet       Date:  1997       Impact factor: 6.150

5.  Prediction of complete gene structures in human genomic DNA.

Authors:  C Burge; S Karlin
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

6.  A new five-year plan for the U.S. Human Genome Project.

Authors:  F Collins; D Galas
Journal:  Science       Date:  1993-10-01       Impact factor: 47.728

7.  Identification of the breast cancer susceptibility gene BRCA2.

Authors:  R Wooster; G Bignell; J Lancaster; S Swift; S Seal; J Mangion; N Collins; S Gregory; C Gumbs; G Micklem
Journal:  Nature       Date:  1995 Dec 21-28       Impact factor: 49.962

8.  Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

Authors:  S M Hebsgaard; P G Korning; N Tolstrup; J Engelbrecht; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

9.  Cleaning the GenBank Arabidopsis thaliana data set.

Authors:  P G Korning; S M Hebsgaard; P Rouze; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-01-15       Impact factor: 16.971

10.  Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames.

Authors:  V V Solovyev; A A Salamov; C B Lawrence
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971
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  3 in total

1.  Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus.

Authors:  R S Millen; R G Olmstead; K L Adams; J D Palmer; N T Lao; L Heggie; T A Kavanagh; J M Hibberd; J C Gray; C W Morden; P J Calie; L S Jermiin; K H Wolfe
Journal:  Plant Cell       Date:  2001-03       Impact factor: 11.277

Review 2.  Computational modeling of gene structure in Arabidopsis thaliana.

Authors:  Volker Brendel; Wei Zhu
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

3.  Identification of candidate markers associated with agronomic traits in rice using discriminant analysis.

Authors:  N Zhang; Y Xu; M Akash; S McCouch; J H Oard
Journal:  Theor Appl Genet       Date:  2005-01-28       Impact factor: 5.699
  3 in total

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