Literature DB >> 17369829

Distributions of epistasis in microbes fit predictions from a fitness landscape model.

Guillaume Martin1, Santiago F Elena, Thomas Lenormand.   

Abstract

How do the fitness effects of several mutations combine? Despite its simplicity, this question is central to the understanding of multilocus evolution. Epistasis (the interaction between alleles at different loci), especially epistasis for fitness traits such as reproduction and survival, influences evolutionary predictions "almost whenever multilocus genetics matters". Yet very few models have sought to predict epistasis, and none has been empirically tested. Here we show that the distribution of epistasis can be predicted from the distribution of single mutation effects, based on a simple fitness landscape model. We show that this prediction closely matches the empirical measures of epistasis that have been obtained for Escherichia coli and the RNA virus vesicular stomatitis virus. Our results suggest that a simple fitness landscape model may be sufficient to quantitatively capture the complex nature of gene interactions. This model may offer a simple and widely applicable alternative to complex metabolic network models, in particular for making evolutionary predictions.

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Year:  2007        PMID: 17369829     DOI: 10.1038/ng1998

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  75 in total

1.  Diminishing returns epistasis among beneficial mutations decelerates adaptation.

Authors:  Hsin-Hung Chou; Hsuan-Chao Chiu; Nigel F Delaney; Daniel Segrè; Christopher J Marx
Journal:  Science       Date:  2011-06-03       Impact factor: 47.728

2.  Natural selection and the genetics of adaptation in threespine stickleback.

Authors:  Dolph Schluter; Kerry B Marchinko; R D H Barrett; Sean M Rogers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

3.  Introduction to focus issue: genetic interactions.

Authors:  Daniel Segrè; Christopher J Marx
Journal:  Chaos       Date:  2010-06       Impact factor: 3.642

4.  The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation.

Authors:  Pierre-Alexis Gros; Hervé Le Nagard; Olivier Tenaillon
Journal:  Genetics       Date:  2009-03-11       Impact factor: 4.562

5.  Selection for chaperone-like mediated genetic robustness at low mutation rate: impact of drift, epistasis and complexity.

Authors:  Pierre-Alexis Gros; Olivier Tenaillon
Journal:  Genetics       Date:  2009-03-23       Impact factor: 4.562

6.  Evolutionary inevitability of sexual antagonism.

Authors:  Tim Connallon; Andrew G Clark
Journal:  Proc Biol Sci       Date:  2013-12-11       Impact factor: 5.349

7.  Environment determines epistatic patterns for a ssDNA virus.

Authors:  S Brian Caudle; Craig R Miller; Darin R Rokyta
Journal:  Genetics       Date:  2013-11-08       Impact factor: 4.562

8.  Nonlinear fitness landscape of a molecular pathway.

Authors:  Lilia Perfeito; Stéphane Ghozzi; Johannes Berg; Karin Schnetz; Michael Lässig
Journal:  PLoS Genet       Date:  2011-07-21       Impact factor: 5.917

9.  Selective sweep at a quantitative trait locus in the presence of background genetic variation.

Authors:  Luis-Miguel Chevin; Frédéric Hospital
Journal:  Genetics       Date:  2008-10-01       Impact factor: 4.562

10.  The distribution of fitness effects in an uncertain world.

Authors:  Tim Connallon; Andrew G Clark
Journal:  Evolution       Date:  2015-05-19       Impact factor: 3.694

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