Literature DB >> 17290983

Assignment of the ferriheme resonances of the low-spin complexes of nitrophorins 1 and 4 by (1)H and (13)C NMR spectroscopy: comparison to structural data obtained from X-ray crystallography.

Tatiana Kh Shokhireva1, Andrzej Weichsel, Kevin M Smith, Robert E Berry, Nikolai V Shokhirev, Celia A Balfour, Hongjun Zhang, William R Montfort, F Ann Walker.   

Abstract

In this work we report the assignment of the majority of the ferriheme resonances of low-spin nitrophorins (NP) 1 and 4 and compare them to those of NP2, published previously. It is found that the structure of the ferriheme complexes of NP1 and NP4, in terms of the orientation of the ligand(s), can be determined with good accuracy by NMR techniques in the low-spin forms and that angle plots proposed previously (Shokhirev, N. V.; Walker, F. A. J. Biol. Inorg. Chem. 1998, 3, 581-594) describe the angle of the effective nodal plane of the axial ligands in solution. The effective nodal plane of low-spin NP1, NP4, and NP2 complexes is in all cases of imidazole and histamine complexes quite similar to the average of the His-59 or -57 and the exogenous ligand angles seen in the X-ray crystal structures. For the cyanide complexes of the nitrophorins, however, the effective nodal plane of the axial ligand does not coincide with the actual histidine-imidazole plane orientation. This appears to be a result of the contribution of an additional source of asymmetry, the orientation of one of the zero-ruffling lines of the heme. Probably this effect exists for the imidazole and histamine complexes as well, but because the effect of asymmetry that occurs from planar exogenous axial ligands is much larger than the effect of heme ruffling the effect of the zero-ruffling line can only be detected for the cyanide complexes, where the only ligand plane is that of the proximal histidine. The three-dimensional structures of the three NP-CN complexes, including that of NP2-CN reported herein, confirm the high degree of ruffling of these complexes. There is an equilibrium between the two heme orientations (A and B) that depends on the heme cavity shape and changes somewhat with exogenous axial ligand. The A:B ratio can be much more accurately measured by NMR spectroscopy than by X-ray crystallography.

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Year:  2007        PMID: 17290983      PMCID: PMC2587420          DOI: 10.1021/ic061408l

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  50 in total

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2.  Kinetics and equilibria in ligand binding by nitrophorins 1-4: evidence for stabilization of a nitric oxide-ferriheme complex through a ligand-induced conformational trap.

Authors:  J F Andersen; X D Ding; C Balfour; T K Shokhireva; D E Champagne; F A Walker; W R Montfort
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3.  Nitric oxide binding to nitrophorin 4 induces complete distal pocket burial.

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6.  Solution 1H-NMR structure of the heme cavity in the low-affinity state for the allosteric monomeric cyano-met hemoglobins from Chironomus thummi thummi. Comparison to the crystal structure.

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7.  Axial ligand complexes of the Rhodnius nitrophorins: reduction potentials, binding constants, EPR spectra, and structures of the 4-iodopyrazole and imidazole complexes of NP4.

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8.  Solution NMR characterization of an unusual distal H-bond network in the active site of the cyanide-inhibited, human heme oxygenase complex of the symmetric substrate, 2,4-dimethyldeuterohemin.

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9.  The crystal structure of nitrophorin 4 at 1.5 A resolution: transport of nitric oxide by a lipocalin-based heme protein.

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  21 in total

1.  Effect of the N-terminus on heme cavity structure, ligand equilibrium, rate constants, and reduction potentials of nitrophorin 2 from Rhodnius prolixus.

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Journal:  Biochemistry       Date:  2007-05-17       Impact factor: 3.162

2.  NMR and DFT investigation of heme ruffling: functional implications for cytochrome c.

Authors:  Matthew D Liptak; Xin Wen; Kara L Bren
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

3.  NMR studies of nitrophorin distal pocket side chain effects on the heme orientation and seating of NP2 as compared to NP1.

Authors:  Tatiana K Shokhireva; Robert E Berry; Hongjun Zhang; Nikolai V Shokhirev; F Ann Walker
Journal:  J Inorg Biochem       Date:  2011-06-17       Impact factor: 4.155

4.  Native N-terminus nitrophorin 2 from the kissing bug: similarities to and differences from NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Hongjun Zhang; F Ann Walker
Journal:  Chem Biodivers       Date:  2012-09       Impact factor: 2.408

5.  Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes.

Authors:  Robert E Berry; Maxim N Shokhirev; Arthur Y W Ho; Fei Yang; Tatiana K Shokhireva; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

6.  Electron spin density on the axial His ligand of high-spin and low-spin nitrophorin 2 probed by heteronuclear NMR spectroscopy.

Authors:  Luciano A Abriata; María-Eugenia Zaballa; Robert E Berry; Fei Yang; Hongjun Zhang; F Ann Walker; Alejandro J Vila
Journal:  Inorg Chem       Date:  2013-01-17       Impact factor: 5.165

7.  Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations.

Authors:  Tatiana K Shokhireva; Nikolai V Shokhirev; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2008-05-06       Impact factor: 3.358

8.  Spectroscopic and functional characterization of nitrophorin 7 from the blood-feeding insect Rhodnius prolixus reveals an important role of its isoform-specific N-terminus for proper protein function.

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Journal:  Biochemistry       Date:  2007-10-24       Impact factor: 3.162

9.  NMR investigations of nitrophorin 2 belt side chain effects on heme orientation and seating of native N-terminus NP2 and NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Allena M Goren; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2013-11-30       Impact factor: 3.358

10.  1H and 13C NMR spectroscopic studies of the ferriheme resonances of three low-spin complexes of wild-type nitrophorin 2 and nitrophorin 2(V24E) as a function of pH.

Authors:  Fei Yang; Markus Knipp; Tatiana K Shokhireva; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2009-06-11       Impact factor: 3.358

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