Literature DB >> 21767470

NMR studies of nitrophorin distal pocket side chain effects on the heme orientation and seating of NP2 as compared to NP1.

Tatiana K Shokhireva1, Robert E Berry, Hongjun Zhang, Nikolai V Shokhirev, F Ann Walker.   

Abstract

The nitrophorins (NP) of the adult blood-sucking insect Rhodnius prolixus fall into two pairs based on sequence identity (NP1,4 (90%) and NP2,3 (79%)), which differ significantly in the size of side chains of residues which contact the heme. These residues include those in the distal pocket of NP2 (I120) and NP1 (T121) and the "belt" that surrounds the heme of NP2 (S40, F42), and NP1(A42, L44). To determine the importance of these residues and others conserved or very similar for the two pairs, including L122(123), L132(133), appropriate mutants of NP2 and NP1 have been prepared and studied by (1)H NMR spectroscopy. Wild-type NP2 has heme orientation ratio (A:B) of 1:8 at equilibrium, while wild-type NP1 has A:B ~1:1 at equilibrium. Another difference between NP2 and NP1 is in the heme seating with regard to His57(59). It is found that among the distal pocket residues investigated, the residue most responsible for heme orientation and seating is I120(T121). F42(L44) and L106(F107) may also be important, but must be investigated in greater detail.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21767470      PMCID: PMC3155619          DOI: 10.1016/j.jinorgbio.2011.06.001

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  57 in total

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Authors:  J F Andersen; X D Ding; C Balfour; T K Shokhireva; D E Champagne; F A Walker; W R Montfort
Journal:  Biochemistry       Date:  2000-08-22       Impact factor: 3.162

2.  Heme proteins--diversity in structural characteristics, function, and folding.

Authors:  Lorna J Smith; Abdullah Kahraman; Janet M Thornton
Journal:  Proteins       Date:  2010-08-01

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4.  Nitric oxide binding to nitrophorin 4 induces complete distal pocket burial.

Authors:  A Weichsel; J F Andersen; S A Roberts; W R Montfort
Journal:  Nat Struct Biol       Date:  2000-07

5.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

6.  Functional consequences of haem orientational disorder in sperm-whale and yellow-fin-tuna myoglobins.

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Journal:  Biochem J       Date:  1987-04-01       Impact factor: 3.857

7.  Mammalian mitochondrial and microsomal cytochromes b(5) exhibit divergent structural and biophysical characteristics.

Authors:  Adriana Altuve; Lijun Wang; David R Benson; Mario Rivera
Journal:  Biochem Biophys Res Commun       Date:  2004-02-06       Impact factor: 3.575

8.  Axial ligand complexes of the Rhodnius nitrophorins: reduction potentials, binding constants, EPR spectra, and structures of the 4-iodopyrazole and imidazole complexes of NP4.

Authors:  Robert E Berry; Xiao D Ding; Tatjana Kh Shokhireva; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2003-12-13       Impact factor: 3.358

9.  The crystal structure of nitrophorin 4 at 1.5 A resolution: transport of nitric oxide by a lipocalin-based heme protein.

Authors:  J F Andersen; A Weichsel; C A Balfour; D E Champagne; W R Montfort
Journal:  Structure       Date:  1998-10-15       Impact factor: 5.006

10.  Mixed regioselectivity in the Arg-177 mutants of Corynebacterium diphtheriae heme oxygenase as a consequence of in-plane heme disorder.

Authors:  Yuhong Zeng; Rahul Deshmukh; Gregori A Caignan; Richard A Bunce; Mario Rivera; Angela Wilks
Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

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  5 in total

1.  Native N-terminus nitrophorin 2 from the kissing bug: similarities to and differences from NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Hongjun Zhang; F Ann Walker
Journal:  Chem Biodivers       Date:  2012-09       Impact factor: 2.408

2.  Nuclear inelastic scattering and Mössbauer spectroscopy as local probes for ligand binding modes and electronic properties in proteins: vibrational behavior of a ferriheme center inside a β-barrel protein.

Authors:  Beate Moeser; Adam Janoschka; Juliusz A Wolny; Hauke Paulsen; Igor Filippov; Robert E Berry; Hongjun Zhang; Aleksandr I Chumakov; F Ann Walker; Volker Schünemann
Journal:  J Am Chem Soc       Date:  2012-02-27       Impact factor: 15.419

3.  Assignment of the 1H NMR resonances of protein residues in close proximity to the heme of the nitrophorins: similarities and differences among the four proteins from the saliva of the adult blood-sucking insect Rhodnius prolixus.

Authors:  Tatiana K Shokhireva; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2012-06-19       Impact factor: 3.358

4.  NMR investigations of nitrophorin 2 belt side chain effects on heme orientation and seating of native N-terminus NP2 and NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Allena M Goren; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2013-11-30       Impact factor: 3.358

5.  Dimerization of nitrophorin 4 at low pH and comparison to the K1A mutant of nitrophorin 1.

Authors:  Robert E Berry; Fei Yang; Tatiana K Shokhireva; Angela M Amoia; Sarah A Garrett; Allena M Goren; Stephanie R Korte; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  Biochemistry       Date:  2014-12-23       Impact factor: 3.162

  5 in total

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