Literature DB >> 14673714

Axial ligand complexes of the Rhodnius nitrophorins: reduction potentials, binding constants, EPR spectra, and structures of the 4-iodopyrazole and imidazole complexes of NP4.

Robert E Berry1, Xiao D Ding, Tatjana Kh Shokhireva, Andrzej Weichsel, William R Montfort, F Ann Walker.   

Abstract

Previously, we utilized 4-iodopyrazole (4IPzH) as a heavy atom derivative for the initial solution of the crystal structure of the nitrophorin from Rhodnius prolixus, NP1, where it was found to bind to the heme with the iodo group disordered in two positions. We have now determined the structure of the 4IPzH complex of NP4 at pH 7.5 and find that the geometry and bond lengths at the iron center are extremely similar to those of the imidazole (ImH) complex of the same protein (structure determined at pH 5.6), except that the G-H loop is not in the closed conformation. 4IPzH binds to the heme of NP4 in an ordered manner, with the iodo substituent pointed toward the opening of the heme pocket, near the surface of the protein. In order to understand the solution chemistry in terms of the relative binding abilities of 4IPzH, ImH, and histamine (Hm, a physiological ligand for the nitrophorins), we have also investigated the equilibrium binding constants and reduction potentials of these three ligand complexes of the four Rhodnius nitrophorins as a function of pH. We have found that, unlike the other Lewis bases, 4IPzH forms less stable complexes with the Fe(III) than the Fe(II) oxidation states of NP1 and NP4, and similar stability for the two oxidation states of NP2 and NP3, suggesting that this ligand is a softer base than ImH or Hm, for both of which the Fe(III) complexes are more stable than those of Fe(II) for all four nitrophorins. Surprisingly, in spite of this and the much lower basicity of 4IPzH than imidazole and histamine, the EPR g-values of all three ligand complexes are very similar.

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Year:  2003        PMID: 14673714     DOI: 10.1007/s00775-003-0505-0

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  30 in total

1.  Kinetics and equilibria in ligand binding by nitrophorins 1-4: evidence for stabilization of a nitric oxide-ferriheme complex through a ligand-induced conformational trap.

Authors:  J F Andersen; X D Ding; C Balfour; T K Shokhireva; D E Champagne; F A Walker; W R Montfort
Journal:  Biochemistry       Date:  2000-08-22       Impact factor: 3.162

2.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

3.  Molecular cloning, overexpression in Escherichia coli, structural and functional characterization of house fly cytochrome b5.

Authors:  V M Guzov; H L Houston; M B Murataliev; F A Walker; R Feyereisen
Journal:  J Biol Chem       Date:  1996-10-25       Impact factor: 5.157

4.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Nitric oxide synthase activity from a hematophagous insect salivary gland.

Authors:  J M Ribeiro; R H Nussenzveig
Journal:  FEBS Lett       Date:  1993-09-13       Impact factor: 4.124

6.  Nitric oxide binding to nitrophorin 4 induces complete distal pocket burial.

Authors:  A Weichsel; J F Andersen; S A Roberts; W R Montfort
Journal:  Nat Struct Biol       Date:  2000-07

7.  Identification of active site residues involved in metal cofactor binding and stereospecific substrate recognition in Mammalian tyrosinase. Implications to the catalytic cycle.

Authors:  Concepción Olivares; José C García-Borrón; Francisco Solano
Journal:  Biochemistry       Date:  2002-01-15       Impact factor: 3.162

8.  Nitric oxide loading of the salivary nitric-oxide-carrying hemoproteins (nitrophorins) in the blood-sucking bug Rhodnius prolixus.

Authors:  R H Nussenzveig; D L Bentley; J M Ribeiro
Journal:  J Exp Biol       Date:  1995-05       Impact factor: 3.312

9.  The EPR of low spin heme complexes. Relation of the t2g hole model to the directional properties of the g tensor, and a new method for calculating the ligand field parameters.

Authors:  C P Taylor
Journal:  Biochim Biophys Acta       Date:  1977-03-28

10.  The crystal structure of nitrophorin 4 at 1.5 A resolution: transport of nitric oxide by a lipocalin-based heme protein.

Authors:  J F Andersen; A Weichsel; C A Balfour; D E Champagne; W R Montfort
Journal:  Structure       Date:  1998-10-15       Impact factor: 5.006

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  22 in total

1.  Effect of the N-terminus on heme cavity structure, ligand equilibrium, rate constants, and reduction potentials of nitrophorin 2 from Rhodnius prolixus.

Authors:  Robert E Berry; Tatiana Kh Shokhireva; Igor Filippov; Maxim N Shokhirev; Hongjun Zhang; F Ann Walker
Journal:  Biochemistry       Date:  2007-05-17       Impact factor: 3.162

2.  NMR studies of the dynamics of nitrophorin 2 bound to nitric oxide.

Authors:  Dhanasekaran Muthu; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  Biochemistry       Date:  2013-10-30       Impact factor: 3.162

3.  Assignment of the ferriheme resonances of the high-spin forms of nitrophorins 1 and 4 by 1H NMR spectroscopy: comparison to structural data obtained from X-ray crystallography.

Authors:  Tatiana Kh Shokhireva; Kevin M Smith; Robert E Berry; Nikolai V Shokhirev; Celia A Balfour; Hongjun Zhang; F Ann Walker
Journal:  Inorg Chem       Date:  2007-01-08       Impact factor: 5.165

4.  NMR studies of nitrophorin distal pocket side chain effects on the heme orientation and seating of NP2 as compared to NP1.

Authors:  Tatiana K Shokhireva; Robert E Berry; Hongjun Zhang; Nikolai V Shokhirev; F Ann Walker
Journal:  J Inorg Biochem       Date:  2011-06-17       Impact factor: 4.155

5.  Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes.

Authors:  Robert E Berry; Maxim N Shokhirev; Arthur Y W Ho; Fei Yang; Tatiana K Shokhireva; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

6.  Electron spin density on the axial His ligand of high-spin and low-spin nitrophorin 2 probed by heteronuclear NMR spectroscopy.

Authors:  Luciano A Abriata; María-Eugenia Zaballa; Robert E Berry; Fei Yang; Hongjun Zhang; F Ann Walker; Alejandro J Vila
Journal:  Inorg Chem       Date:  2013-01-17       Impact factor: 5.165

7.  Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations.

Authors:  Tatiana K Shokhireva; Nikolai V Shokhirev; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2008-05-06       Impact factor: 3.358

8.  Spectroscopic and functional characterization of nitrophorin 7 from the blood-feeding insect Rhodnius prolixus reveals an important role of its isoform-specific N-terminus for proper protein function.

Authors:  Markus Knipp; Fei Yang; Robert E Berry; Hongjun Zhang; Maxim N Shokhirev; F Ann Walker
Journal:  Biochemistry       Date:  2007-10-24       Impact factor: 3.162

9.  NMR investigations of nitrophorin 2 belt side chain effects on heme orientation and seating of native N-terminus NP2 and NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Allena M Goren; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2013-11-30       Impact factor: 3.358

10.  1H and 13C NMR spectroscopic studies of the ferriheme resonances of three low-spin complexes of wild-type nitrophorin 2 and nitrophorin 2(V24E) as a function of pH.

Authors:  Fei Yang; Markus Knipp; Tatiana K Shokhireva; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2009-06-11       Impact factor: 3.358

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