Literature DB >> 17272716

Thymine dimerization in DNA is an ultrafast photoreaction.

Wolfgang J Schreier1, Tobias E Schrader, Florian O Koller, Peter Gilch, Carlos E Crespo-Hernández, Vijay N Swaminathan, Thomas Carell, Wolfgang Zinth, Bern Kohler.   

Abstract

Femtosecond time-resolved infrared spectroscopy was used to study the formation of cyclobutane dimers in the all-thymine oligodeoxynucleotide (dT)18 by ultraviolet light at 272 nanometers. The appearance of marker bands in the time-resolved spectra indicates that the dimers are fully formed approximately 1 picosecond after ultraviolet excitation. The ultrafast appearance of this mutagenic photolesion points to an excited-state reaction that is approximately barrierless for bases that are properly oriented at the instant of light absorption. The low quantum yield of this photoreaction is proposed to result from infrequent conformational states in the unexcited polymer, revealing a strong link between conformation before light absorption and photodamage.

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Year:  2007        PMID: 17272716      PMCID: PMC2792699          DOI: 10.1126/science.1135428

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  27 in total

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Authors:  Ivo H M van Stokkum; Delmar S Larsen; Rienk van Grondelle
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2.  RNA is more UV resistant than DNA: the formation of UV-induced DNA lesions is strongly sequence and conformation dependent.

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Journal:  Chemistry       Date:  2004-11-05       Impact factor: 5.236

3.  Effect of denaturation on the photochemistry of pyrimidine bases in isolated DNA.

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Journal:  J Photochem Photobiol B       Date:  2005-10-21       Impact factor: 6.252

4.  On the mechanism of thymine photodimerization.

Authors:  A A Lamola; J Eisinger
Journal:  Proc Natl Acad Sci U S A       Date:  1968-01       Impact factor: 11.205

5.  Solvent-dependent photophysics of 1-cyclohexyluracil: ultrafast branching in the initial bright state leads nonradiatively to the electronic ground state and a long-lived 1npi* state.

Authors:  Patrick M Hare; Carlos E Crespo-Hernández; Bern Kohler
Journal:  J Phys Chem B       Date:  2006-09-21       Impact factor: 2.991

6.  UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases.

Authors:  J M Gale; K A Nissen; M J Smerdon
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

7.  Induction of photoproducts in synthetic polynucleotides by far and near ultraviolet radiation.

Authors:  D L Mitchell; J M Clarkson
Journal:  Photochem Photobiol       Date:  1984-12       Impact factor: 3.421

8.  Thymine dimer formation as a probe of the path of DNA in and between nucleosomes in intact chromatin.

Authors:  J R Pehrson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

9.  Flexibility of single-stranded DNA: use of gapped duplex helices to determine the persistence lengths of poly(dT) and poly(dA).

Authors:  J B Mills; E Vacano; P J Hagerman
Journal:  J Mol Biol       Date:  1999-01-08       Impact factor: 5.469

10.  Monitoring the direct and indirect damage of DNA bases and polynucleotides by using time-resolved infrared spectroscopy.

Authors:  Marina K Kuimova; Alexander J Cowan; Pavel Matousek; Anthony W Parker; Xue Zhong Sun; Michael Towrie; Michael W George
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-07       Impact factor: 11.205

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  75 in total

1.  Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy.

Authors:  James P Hall; Fergus E Poynton; Páraic M Keane; Sarah P Gurung; John A Brazier; David J Cardin; Graeme Winter; Thorfinnur Gunnlaugsson; Igor V Sazanovich; Michael Towrie; Christine J Cardin; John M Kelly; Susan J Quinn
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2.  UVA generates pyrimidine dimers in DNA directly.

Authors:  Yong Jiang; Mahir Rabbi; Minkyu Kim; Changhong Ke; Whasil Lee; Robert L Clark; Piotr A Mieczkowski; Piotr E Marszalek
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

3.  Acceleration of 5-methylcytosine deamination in cyclobutane dimers by G and its implications for UV-induced C-to-T mutation hotspots.

Authors:  Vincent J Cannistraro; John-Stephen Taylor
Journal:  J Mol Biol       Date:  2009-07-22       Impact factor: 5.469

4.  Ultrafast excited-state dynamics of RNA and DNA C tracts.

Authors:  Boiko Cohen; Matthew H Larson; Bern Kohler
Journal:  Chem Phys       Date:  2008-06       Impact factor: 2.348

5.  Probing the reaction mechanism of spore photoproduct lyase (SPL) via diastereoselectively labeled dinucleotide SP TpT substrates.

Authors:  Linlin Yang; Gengjie Lin; Degang Liu; Karl J Dria; Joshua Telser; Lei Li
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6.  Conical intersections in solution: formulation, algorithm, and implementation with combined quantum mechanics/molecular mechanics method.

Authors:  Ganglong Cui; Weitao Yang
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7.  An AIMD study of the CPD repair mechanism in water: reaction free energy surface and mechanistic implications.

Authors:  Ali A Hassanali; Dongping Zhong; Sherwin J Singer
Journal:  J Phys Chem B       Date:  2011-03-18       Impact factor: 2.991

8.  Stochastic Liouville equations for femtosecond stimulated Raman spectroscopy.

Authors:  Bijay Kumar Agarwalla; Hideo Ando; Konstantin E Dorfman; Shaul Mukamel
Journal:  J Chem Phys       Date:  2015-01-14       Impact factor: 3.488

9.  Thymine photodimer formation in DNA hairpins. Unusual conformations favor (6 - 4) vs. (2 + 2) adducts.

Authors:  Mahesh Hariharan; Karsten Siegmund; Clifton Saurel; Martin McCullagh; George C Schatz; Frederick D Lewis
Journal:  Photochem Photobiol Sci       Date:  2014-02       Impact factor: 3.982

10.  Deuterium isotope effect on excited-state dynamics in an alternating GC oligonucleotide.

Authors:  Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

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