Literature DB >> 16970494

Solvent-dependent photophysics of 1-cyclohexyluracil: ultrafast branching in the initial bright state leads nonradiatively to the electronic ground state and a long-lived 1npi* state.

Patrick M Hare1, Carlos E Crespo-Hernández, Bern Kohler.   

Abstract

The modified nucleic acid base, 1-cyclohexyluracil, was studied by femtosecond transient absorption spectroscopy in protic and aprotic solvents of varying polarity. UV excitation at 267 nm populates the lowest-energy bright state, a (1)pipi* state, which has a lifetime of 120-270 fs, depending on the solvent. In all solvents, this initial bright state population bifurcates with approximately 60% undergoing subpicosecond nonradiative decay to the electronic ground state and the remaining population branching to a singlet dark state. The latter absorbs between 340 and 450 nm. The latter state is assigned to the lowest-energy (1)npi* state. It decays to the electronic ground state with a lifetime that varies from 26 ps in water to at least several nanoseconds in aprotic solvents. The results suggest that the two nonradiative decay pathways identified for photoexcited uracil in recent quantum chemical calculations (Matsika, S. J. Phys. Chem. A. 2004, 108, 7584) are simultaneously operative in a wide variety of solvent environments. The lowest-energy triplet state was also detected by transient absorption. The triplet population appears in a few picoseconds and is not formed from the thermalized (1)npi* state. It is suggested that high spin-orbit coupling is found only along initial segments of the nonradiative decay pathways. Efficient intersystem crossing prior to vibrational cooling offers a possible explanation for the wavelength-dependent triplet yields seen in single DNA bases.

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Year:  2006        PMID: 16970494     DOI: 10.1021/jp064714t

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

1.  Internal conversion to the electronic ground state occurs via two distinct pathways for pyrimidine bases in aqueous solution.

Authors:  Patrick M Hare; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-29       Impact factor: 11.205

2.  Thymine dimerization in DNA is an ultrafast photoreaction.

Authors:  Wolfgang J Schreier; Tobias E Schrader; Florian O Koller; Peter Gilch; Carlos E Crespo-Hernández; Vijay N Swaminathan; Thomas Carell; Wolfgang Zinth; Bern Kohler
Journal:  Science       Date:  2007-02-02       Impact factor: 47.728

3.  Ultrafast excited-state dynamics of RNA and DNA C tracts.

Authors:  Boiko Cohen; Matthew H Larson; Bern Kohler
Journal:  Chem Phys       Date:  2008-06       Impact factor: 2.348

4.  Time-resolved infrared spectroscopy of the lowest triplet state of thymine and thymidine.

Authors:  Patrick M Hare; Chris T Middleton; Kristin I Mertel; John M Herbert; Bern Kohler
Journal:  Chem Phys       Date:  2008-05-23       Impact factor: 2.348

5.  Intersystem Crossing Pathways in the Noncanonical Nucleobase 2-Thiouracil: A Time-Dependent Picture.

Authors:  Sebastian Mai; Philipp Marquetand; Leticia González
Journal:  J Phys Chem Lett       Date:  2016-05-17       Impact factor: 6.475

6.  A Combination of Chemometrics and Quantum Mechanics Methods Applied to Analysis of Femtosecond Transient Absorption Spectrum of Ortho-Nitroaniline.

Authors:  Jing Yi; Ying Xiong; Kemei Cheng; Menglong Li; Genbai Chu; Xuemei Pu; Tao Xu
Journal:  Sci Rep       Date:  2016-01-19       Impact factor: 4.379

7.  Detection of the thietane precursor in the UVA formation of the DNA 6-4 photoadduct.

Authors:  Christian Reichardt; Sean J Hoehn; Luis A Ortiz-Rodríguez; Steffen Jockusch; Carlos E Crespo-Hernández
Journal:  Nat Commun       Date:  2020-07-17       Impact factor: 14.919

8.  Excited State Lifetimes of Sulfur-Substituted DNA and RNA Monomers Probed Using the Femtosecond Fluorescence Up-Conversion Technique.

Authors:  Matthew M Brister; Thomas Gustavsson; Carlos E Crespo-Hernández
Journal:  Molecules       Date:  2020-01-29       Impact factor: 4.411

9.  Electronic and structural elements that regulate the excited-state dynamics in purine nucleobase derivatives.

Authors:  Carlos E Crespo-Hernández; Lara Martínez-Fernández; Clemens Rauer; Christian Reichardt; Sebastian Mai; Marvin Pollum; Philipp Marquetand; Leticia González; Inés Corral
Journal:  J Am Chem Soc       Date:  2015-03-25       Impact factor: 15.419

10.  Intersystem crossing-branched excited-state intramolecular proton transfer for o-nitrophenol: An ab initio on-the-fly nonadiabatic molecular dynamic simulation.

Authors:  Chao Xu; Le Yu; Chaoyuan Zhu; Jianguo Yu; Zexing Cao
Journal:  Sci Rep       Date:  2016-05-25       Impact factor: 4.379

  10 in total

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