Literature DB >> 17238427

A novel method for the efficient retrieval of similar multiparameter physiologic time series using wavelet-based symbolic representations.

Mohammed Saeed1, Roger Mark.   

Abstract

An important challenge in data mining is in identifying "similar" temporal patterns that may illuminate hidden information in a database of time series. We are actively engaged in the development of a temporal database of several thousand ICU patient records that contains time-varying physiologic measurements recorded over each patient's ICU stay. The discovery of multiparameter temporal patterns that are predictive of physiologic instability may aid clinicians in optimizing care for critically-ill patients. In this paper, we introduce a novel temporal similarity metric based on a transformation of time series data into an intuitive symbolic representation. The symbolic transform is based on a wavelet decomposition to characterize time series dynamics at multiple time scales. The symbolic transformation allows us to utilize classical information retrieval algorithms based on a vector-space model. Our algorithm is capable of assessing the similarity between multi-dimensional time series and is computationally efficient. We utilized our algorithm to identify similar physiologic patterns in hemodynamic time series from ICU patients. The results of this study demonstrate that similarities between different patient time series may have meaningful physiologic interpretations in the detection of impending hemodynamic deterioration. Thus, our framework may be of potential use in clinical decision-support systems. As a generalized time series similarity metric, the algorithms that are described have applications in several other domains as well.

Entities:  

Mesh:

Year:  2006        PMID: 17238427      PMCID: PMC1839671     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  4 in total

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Journal:  Crit Care Med       Date:  2006-06       Impact factor: 7.598

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Journal:  Crit Care Med       Date:  2006-06       Impact factor: 7.598

4.  MIMIC II: a massive temporal ICU patient database to support research in intelligent patient monitoring.

Authors:  M Saeed; C Lieu; G Raber; R G Mark
Journal:  Comput Cardiol       Date:  2002
  4 in total
  12 in total

1.  Multiparameter Intelligent Monitoring in Intensive Care II: a public-access intensive care unit database.

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Journal:  Crit Care Med       Date:  2011-05       Impact factor: 7.598

2.  Visualizing multivariate time series data to detect specific medical conditions.

Authors:  Patricia Ordóñez; Marie DesJardins; Carolyn Feltes; Christoph U Lehmann; James Fackler
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

3.  Predicting Patient's Trajectory of Physiological Data using Temporal Trends in Similar Patients: A System for Near-Term Prognostics.

Authors:  Shahram Ebadollahi; Jimeng Sun; David Gotz; Jianying Hu; Daby Sow; Chalapathy Neti
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

4.  Hypotension Risk Prediction via Sequential Contrast Patterns of ICU Blood Pressure.

Authors:  Shameek Ghosh; Mengling Feng; Hung Nguyen; Jinyan Li
Journal:  IEEE J Biomed Health Inform       Date:  2015-07-07       Impact factor: 5.772

5.  An investigation of patterns in hemodynamic data indicative of impending hypotension in intensive care.

Authors:  Joon Lee; Roger G Mark
Journal:  Biomed Eng Online       Date:  2010-10-25       Impact factor: 2.819

6.  A Multivariate Timeseries Modeling Approach to Severity of Illness Assessment and Forecasting in ICU with Sparse, Heterogeneous Clinical Data.

Authors:  Marzyeh Ghassemi; Marco A F Pimentel; Tristan Naumann; Thomas Brennan; David A Clifton; Peter Szolovits; Mengling Feng
Journal:  Proc Conf AAAI Artif Intell       Date:  2015-01

7.  A physiological time series dynamics-based approach to patient monitoring and outcome prediction.

Authors:  Li-wei H Lehman; Ryan P Adams; Louis Mayaud; George B Moody; Atul Malhotra; Roger G Mark; Shamim Nemati
Journal:  IEEE J Biomed Health Inform       Date:  2014-06-30       Impact factor: 5.772

8.  Relationship between nursing documentation and patients' mortality.

Authors:  Sarah A Collins; Kenrick Cato; David Albers; Karen Scott; Peter D Stetson; Suzanne Bakken; David K Vawdrey
Journal:  Am J Crit Care       Date:  2013-07       Impact factor: 2.228

9.  Discovering shared cardiovascular dynamics within a patient cohort.

Authors:  Shamim Nemati; Li-wei H Lehman; Ryan P Adams; Atul Malhotra
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2012

10.  Understanding vasopressor intervention and weaning: risk prediction in a public heterogeneous clinical time series database.

Authors:  Mike Wu; Marzyeh Ghassemi; Mengling Feng; Leo A Celi; Peter Szolovits; Finale Doshi-Velez
Journal:  J Am Med Inform Assoc       Date:  2017-05-01       Impact factor: 4.497

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