Literature DB >> 27182460

A Multivariate Timeseries Modeling Approach to Severity of Illness Assessment and Forecasting in ICU with Sparse, Heterogeneous Clinical Data.

Marzyeh Ghassemi1, Marco A F Pimentel2, Tristan Naumann3, Thomas Brennan4, David A Clifton2, Peter Szolovits5, Mengling Feng4.   

Abstract

The ability to determine patient acuity (or severity of illness) has immediate practical use for clinicians. We evaluate the use of multivariate timeseries modeling with the multi-task Gaussian process (GP) models using noisy, incomplete, sparse, heterogeneous and unevenly-sampled clinical data, including both physiological signals and clinical notes. The learned multi-task GP (MTGP) hyperparameters are then used to assess and forecast patient acuity. Experiments were conducted with two real clinical data sets acquired from ICU patients: firstly, estimating cerebrovascular pressure reactivity, an important indicator of secondary damage for traumatic brain injury patients, by learning the interactions between intracranial pressure and mean arterial blood pressure signals, and secondly, mortality prediction using clinical progress notes. In both cases, MTGPs provided improved results: an MTGP model provided better results than single-task GP models for signal interpolation and forecasting (0.91 vs 0.69 RMSE), and the use of MTGP hyperparameters obtained improved results when used as additional classification features (0.812 vs 0.788 AUC).

Entities:  

Year:  2015        PMID: 27182460      PMCID: PMC4864016     

Source DB:  PubMed          Journal:  Proc Conf AAAI Artif Intell        ISSN: 2159-5399


  20 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-10       Impact factor: 11.205

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Authors:  Michael J Breslow; Omar Badawi
Journal:  Chest       Date:  2012-01       Impact factor: 9.410

3.  Artifact removal for intracranial pressure monitoring signals: a robust solution with signal decomposition.

Authors:  Mengling Feng; Liang Yu Loy; Feng Zhang; Cuntai Guan
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2011

4.  ICU acuity: real-time models versus daily models.

Authors:  Caleb W Hug; Peter Szolovits
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

5.  Intracranial pressure response to induced hypertension: role of dynamic pressure autoregulation.

Authors:  Roman Hlatky; Alex B Valadka; Claudia S Robertson
Journal:  Neurosurgery       Date:  2005-11       Impact factor: 4.654

6.  Multiparameter Intelligent Monitoring in Intensive Care II: a public-access intensive care unit database.

Authors:  Mohammed Saeed; Mauricio Villarroel; Andrew T Reisner; Gari Clifford; Li-Wei Lehman; George Moody; Thomas Heldt; Tin H Kyaw; Benjamin Moody; Roger G Mark
Journal:  Crit Care Med       Date:  2011-05       Impact factor: 7.598

7.  Dynamic time warping and machine learning for signal quality assessment of pulsatile signals.

Authors:  Q Li; G D Clifford
Journal:  Physiol Meas       Date:  2012-08-17       Impact factor: 2.833

8.  A novel method for the efficient retrieval of similar multiparameter physiologic time series using wavelet-based symbolic representations.

Authors:  Mohammed Saeed; Roger Mark
Journal:  AMIA Annu Symp Proc       Date:  2006

9.  Gaussian processes for personalized e-health monitoring with wearable sensors.

Authors:  Lei Clifton; David A Clifton; Marco A F Pimentel; Peter J Watkinson; Lionel Tarassenko
Journal:  IEEE Trans Biomed Eng       Date:  2013-01       Impact factor: 4.538

10.  Continuous assessment of the cerebral vasomotor reactivity in head injury.

Authors:  M Czosnyka; P Smielewski; P Kirkpatrick; R J Laing; D Menon; J D Pickard
Journal:  Neurosurgery       Date:  1997-07       Impact factor: 4.654

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  24 in total

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Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

2.  Comparing lagged linear correlation, lagged regression, Granger causality, and vector autoregression for uncovering associations in EHR data.

Authors:  Matthew E Levine; David J Albers; George Hripcsak
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

Review 3.  Machine Learning for Healthcare: On the Verge of a Major Shift in Healthcare Epidemiology.

Authors:  Jenna Wiens; Erica S Shenoy
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4.  A Personalized Predictive Framework for Multivariate Clinical Time Series via Adaptive Model Selection.

Authors:  Zitao Liu; Milos Hauskrecht
Journal:  Proc ACM Int Conf Inf Knowl Manag       Date:  2017-11

5.  Learning Hierarchical Representations of Electronic Health Records for Clinical Outcome Prediction.

Authors:  Luchen Liu; Haoran Li; Zhiting Hu; Haoran Shi; Zichang Wang; Jian Tang; Ming Zhang
Journal:  AMIA Annu Symp Proc       Date:  2020-03-04

6.  Learning Adaptive Forecasting Models from Irregularly Sampled Multivariate Clinical Data.

Authors:  Zitao Liu; Milos Hauskrecht
Journal:  Proc Conf AAAI Artif Intell       Date:  2016-02

Review 7.  Natural Language Processing for EHR-Based Computational Phenotyping.

Authors:  Zexian Zeng; Yu Deng; Xiaoyu Li; Tristan Naumann; Yuan Luo
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-06-25       Impact factor: 3.710

8.  Understanding vasopressor intervention and weaning: risk prediction in a public heterogeneous clinical time series database.

Authors:  Mike Wu; Marzyeh Ghassemi; Mengling Feng; Leo A Celi; Peter Szolovits; Finale Doshi-Velez
Journal:  J Am Med Inform Assoc       Date:  2017-05-01       Impact factor: 4.497

9.  Clinician involvement in research on machine learning-based predictive clinical decision support for the hospital setting: A scoping review.

Authors:  Jessica M Schwartz; Amanda J Moy; Sarah C Rossetti; Noémie Elhadad; Kenrick D Cato
Journal:  J Am Med Inform Assoc       Date:  2021-03-01       Impact factor: 4.497

10.  MGP-AttTCN: An interpretable machine learning model for the prediction of sepsis.

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Journal:  PLoS One       Date:  2021-05-07       Impact factor: 3.240

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