Literature DB >> 12499286

Wavelets in bioinformatics and computational biology: state of art and perspectives.

Pietro Liò1.   

Abstract

MOTIVATION: At a recent meeting, the wavelet transform was depicted as a small child kicking back at its father, the Fourier transform. Wavelets are more efficient and faster than Fourier methods in capturing the essence of data. Nowadays there is a growing interest in using wavelets in the analysis of biological sequences and molecular biology-related signals.
RESULTS: This review is intended to summarize the potential of state of the art wavelets, and in particular wavelet statistical methodology, in different areas of molecular biology: genome sequence, protein structure and microarray data analysis. I conclude by discussing the use of wavelets in modeling biological structures.

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Mesh:

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Year:  2003        PMID: 12499286     DOI: 10.1093/bioinformatics/19.1.2

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  35 in total

1.  Does history repeat itself? Wavelets and the phylodynamics of influenza A.

Authors:  Jennifer A Tom; Janet S Sinsheimer; Marc A Suchard
Journal:  Mol Biol Evol       Date:  2011-12-08       Impact factor: 16.240

2.  Prediction of the types of membrane proteins based on discrete wavelet transform and support vector machines.

Authors:  Jian-Ding Qiu; Xing-Yu Sun; Jian-Hua Huang; Ru-Ping Liang
Journal:  Protein J       Date:  2010-02       Impact factor: 2.371

3.  Prediction of mitochondrial proteins using discrete wavelet transform.

Authors:  Lin Jiang; Menglong Li; Zhining Wen; Kelong Wang; Yuanbo Diao
Journal:  Protein J       Date:  2006-06       Impact factor: 2.371

4.  Analysis of functional signaling domains from fluorescence imaging and the two-dimensional continuous wavelet transform.

Authors:  Donald E Mager; Evgeny Kobrinsky; Amirali Masoudieh; Anna Maltsev; Darrell R Abernethy; Nikolai M Soldatov
Journal:  Biophys J       Date:  2007-06-22       Impact factor: 4.033

5.  The wavelet-based cluster analysis for temporal gene expression data.

Authors:  J Z Song; K M Duan; T Ware; M Surette
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

6.  Identification of higher-order functional domains in the human ENCODE regions.

Authors:  Robert E Thurman; Nathan Day; William S Noble; John A Stamatoyannopoulos
Journal:  Genome Res       Date:  2007-06       Impact factor: 9.043

7.  A wavelet-based method to exploit epigenomic language in the regulatory region.

Authors:  Nha Nguyen; An Vo; Kyoung-Jae Won
Journal:  Bioinformatics       Date:  2013-10-04       Impact factor: 6.937

8.  Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays.

Authors:  Christopher D Herring; Marni Raffaelle; Timothy E Allen; Elenita I Kanin; Robert Landick; Aseem Z Ansari; Bernhard Ø Palsson
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

9.  Wavelet Analysis of Protein Motion.

Authors:  Noah C Benson; Valerie Daggett
Journal:  Int J Wavelets Multiresolut Inf Process       Date:  2012-07       Impact factor: 1.408

10.  Analysis of mass spectrometry data using sub-spectra.

Authors:  Wouter Meuleman; Judith Y M N Engwegen; Marie-Christine W Gast; Lodewyk F A Wessels; Marcel J T Reinders
Journal:  BMC Bioinformatics       Date:  2009-01-30       Impact factor: 3.169

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