Literature DB >> 21961588

Gating at the selectivity filter of ion channels that conduct Na+ and K+ ions.

Simone Furini1, Carmen Domene.   

Abstract

The NaK channel is a cation selective channel with similar permeability for K(+) and Na(+). The available crystallographic structure of wild-type (WT) NaK is usually associated with a conductive state of the channel. Here, potential of mean force for complete conduction events of Na(+) and K(+) ions through NaK show that: i), large energy barriers prevent the passage of ions through the WT NaK structure, ii), the barriers are correlated to the presence of a hydrogen bond between Asp-66 and Asn-68, and iii), the structure of NaK mutated to mimic cyclic nucleotide-gated channels conducts Na(+) and K(+). These results support the hypothesis that the filter of cation selective channels can adopt at least two different structures: a conductive one, represented by the x-ray structures of the NaK-CNG chimeras, and a closed one, represented by the x-ray structures of the WT NaK.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21961588      PMCID: PMC3183810          DOI: 10.1016/j.bpj.2011.08.035

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

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2.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Two different conformational states of the KirBac3.1 potassium channel revealed by electron crystallography.

Authors:  Anling Kuo; Carmen Domene; Louise N Johnson; Declan A Doyle; Catherine Vénien-Bryan
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4.  Brownian dynamics investigation into the conductance state of the MscS channel crystal structure.

Authors:  Taira Vora; Ben Corry; Shin-Ho Chung
Journal:  Biochim Biophys Acta       Date:  2006-04-26

5.  Dynamics, energetics, and selectivity of the low-K+ KcsA channel structure.

Authors:  Carmen Domene; Simone Furini
Journal:  J Mol Biol       Date:  2009-04-23       Impact factor: 5.469

6.  Molecular dynamics of the KcsA K(+) channel in a bilayer membrane.

Authors:  S Bernèche; B Roux
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

7.  Absence of ion-binding affinity in the putatively inactivated low-[K+] structure of the KcsA potassium channel.

Authors:  Céline Boiteux; Simon Bernèche
Journal:  Structure       Date:  2011-01-12       Impact factor: 5.006

Review 8.  Examining ion channel properties using free-energy methods.

Authors:  Carmen Domene; Simone Furini
Journal:  Methods Enzymol       Date:  2009-11-13       Impact factor: 1.600

9.  K+/Na+ selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints.

Authors:  Sameer Varma; Dubravko Sabo; Susan B Rempe
Journal:  J Mol Biol       Date:  2007-11-28       Impact factor: 5.469

10.  Mutations reveal voltage gating of CNGA1 channels in saturating cGMP.

Authors:  Juan Ramón Martínez-François; Yanping Xu; Zhe Lu
Journal:  J Gen Physiol       Date:  2009-08       Impact factor: 4.086

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  9 in total

Review 1.  Temperature sensitivity of two-pore (K2P) potassium channels.

Authors:  Eve R Schneider; Evan O Anderson; Elena O Gracheva; Sviatoslav N Bagriantsev
Journal:  Curr Top Membr       Date:  2014       Impact factor: 3.049

Review 2.  K(+) and Na(+) conduction in selective and nonselective ion channels via molecular dynamics simulations.

Authors:  Simone Furini; Carmen Domene
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

3.  Nonselective conduction in a mutated NaK channel with three cation-binding sites.

Authors:  Simone Furini; Carmen Domene
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

4.  A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels.

Authors:  Luisa Maria Rosaria Napolitano; Ina Bisha; Matteo De March; Arin Marchesi; Manuel Arcangeletti; Nicola Demitri; Monica Mazzolini; Alex Rodriguez; Alessandra Magistrato; Silvia Onesti; Alessandro Laio; Vincent Torre
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

5.  Energetics of Ion Permeation in an Open-Activated TRPV1 Channel.

Authors:  Christian Jorgensen; Simone Furini; Carmen Domene
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

6.  Energetics of Multi-Ion Conduction Pathways in Potassium Ion Channels.

Authors:  Philip W Fowler; Enrique Abad; Oliver Beckstein; Mark S P Sansom
Journal:  J Chem Theory Comput       Date:  2013-10-08       Impact factor: 6.578

7.  Ion-dependent structure, dynamics, and allosteric coupling in a non-selective cation channel.

Authors:  Adam Lewis; Vilius Kurauskas; Marco Tonelli; Katherine Henzler-Wildman
Journal:  Nat Commun       Date:  2021-10-28       Impact factor: 14.919

8.  Detailed Examination of a Single Conduction Event in a Potassium Channel.

Authors:  Philip W Fowler; Oliver Beckstein; Enrique Abad; Mark S P Sansom
Journal:  J Phys Chem Lett       Date:  2013-08-29       Impact factor: 6.888

9.  Ion Concentration- and Voltage-Dependent Push and Pull Mechanisms of Potassium Channel Ion Conduction.

Authors:  Kota Kasahara; Matsuyuki Shirota; Kengo Kinoshita
Journal:  PLoS One       Date:  2016-03-07       Impact factor: 3.240

  9 in total

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