Literature DB >> 16467789

Atomic structure of a Na+- and K+-conducting channel.

Ning Shi1, Sheng Ye, Amer Alam, Liping Chen, Youxing Jiang.   

Abstract

Ion selectivity is one of the basic properties that define an ion channel. Most tetrameric cation channels, which include the K+, Ca2+, Na+ and cyclic nucleotide-gated channels, probably share a similar overall architecture in their ion-conduction pore, but the structural details that determine ion selection are different. Although K+ channel selectivity has been well studied from a structural perspective, little is known about the structure of other cation channels. Here we present crystal structures of the NaK channel from Bacillus cereus, a non-selective tetrameric cation channel, in its Na+- and K+-bound states at 2.4 A and 2.8 A resolution, respectively. The NaK channel shares high sequence homology and a similar overall structure with the bacterial KcsA K+ channel, but its selectivity filter adopts a different architecture. Unlike a K+ channel selectivity filter, which contains four equivalent K+-binding sites, the selectivity filter of the NaK channel preserves the two cation-binding sites equivalent to sites 3 and 4 of a K+ channel, whereas the region corresponding to sites 1 and 2 of a K+ channel becomes a vestibule in which ions can diffuse but not bind specifically. Functional analysis using an 86Rb flux assay shows that the NaK channel can conduct both Na+ and K+ ions. We conclude that the sequence of the NaK selectivity filter resembles that of a cyclic nucleotide-gated channel and its structure may represent that of a cyclic nucleotide-gated channel pore.

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Year:  2006        PMID: 16467789     DOI: 10.1038/nature04508

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  114 in total

1.  Gating at the selectivity filter of ion channels that conduct Na+ and K+ ions.

Authors:  Simone Furini; Carmen Domene
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

Review 2.  Structures of membrane proteins.

Authors:  Kutti R Vinothkumar; Richard Henderson
Journal:  Q Rev Biophys       Date:  2010-02       Impact factor: 5.318

3.  Voltage profile along the permeation pathway of an open channel.

Authors:  Jorge E Contreras; Jin Chen; Albert Y Lau; Vishwanath Jogini; Benoît Roux; Miguel Holmgren
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

4.  Mapping the importance of four factors in creating monovalent ion selectivity in biological molecules.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

5.  Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites.

Authors:  Mehabaw G Derebe; David B Sauer; Weizhong Zeng; Amer Alam; Ning Shi; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

6.  Role of protein dynamics in ion selectivity and allosteric coupling in the NaK channel.

Authors:  Joshua B Brettmann; Darya Urusova; Marco Tonelli; Jonathan R Silva; Katherine A Henzler-Wildman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

7.  Structures of the Human HCN1 Hyperpolarization-Activated Channel.

Authors:  Chia-Hsueh Lee; Roderick MacKinnon
Journal:  Cell       Date:  2017-01-12       Impact factor: 41.582

8.  Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore.

Authors:  Mehabaw G Derebe; Weizhong Zeng; Yang Li; Amer Alam; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

9.  Structural insight into Ca2+ specificity in tetrameric cation channels.

Authors:  Amer Alam; Ning Shi; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

10.  Symmetry-restrained molecular dynamics simulations improve homology models of potassium channels.

Authors:  Andriy Anishkin; Adina L Milac; H Robert Guy
Journal:  Proteins       Date:  2010-03
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