Literature DB >> 2480600

Circular RNAs: relics of precellular evolution?

T O Diener1.   

Abstract

The demonstration of enzymatic capabilities of certain RNAs, in addition to their well-known template properties, has led to the recognition that RNAs are the only biological macromolecules that can function both as genotype and phenotype, hence raising the possibility of Darwinian selection and precellular evolution at the RNA level in the absence of DNA or protein. Recent models of such precellular RNA systems are patterned after the properties of intron-derived ribozymes. On the basis of a phylogenetic analysis and known properties of certain small plant pathogenic RNAs (viroids and viroid-like satellite RNAs), I suggest that these plant RNAs are more plausible candidates than introns as "living fossils" of a precellular RNA world. Their small size and circularity would have enhanced probability of their survival in error-prone, primitive self-replicating RNA systems and assured complete replication without the need for initiation or termination signals. All of these RNAs possess efficient mechanisms for the precise cleavage of monomers from oligomeric replication intermediates. Some (most viroids) require a host factor, but others (viroid-like satellite RNAs and one viroid) function as self-cleaving RNA enzymes far smaller and simpler than those derived from introns. The question is raised whether introns could have evolved from viroids or viroid-like satellite RNAs rather than vice versa, as has been widely speculated.

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Year:  1989        PMID: 2480600      PMCID: PMC298497          DOI: 10.1073/pnas.86.23.9370

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  RNA chemistry. Ribozyme self-replication?

Authors:  T R Cech
Journal:  Nature       Date:  1989-06-15       Impact factor: 49.962

Review 2.  On the origin of RNA splicing and introns.

Authors:  P A Sharp
Journal:  Cell       Date:  1985-09       Impact factor: 41.582

3.  A model for the RNA-catalyzed replication of RNA.

Authors:  T R Cech
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

4.  Structural and ionic requirements for self-cleavage of virusoid RNAs and trans self-cleavage of viroid RNA.

Authors:  A C Forster; A C Jeffries; C C Sheldon; R H Symons
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

5.  RNA evolution and the origins of life.

Authors:  G F Joyce
Journal:  Nature       Date:  1989-03-16       Impact factor: 49.962

6.  Potato spindle tuber "virus". IV. A replicating, low molecular weight RNA.

Authors:  T O Diener
Journal:  Virology       Date:  1971-08       Impact factor: 3.616

7.  The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.

Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

8.  Nucleotide sequence and secondary structure of apple scar skin viroid.

Authors:  J Hashimoto; H Koganezawa
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

9.  A nonenzymatic RNA polymerase model.

Authors:  T Inoue; L E Orgel
Journal:  Science       Date:  1983-02-18       Impact factor: 47.728

10.  Linear oligomeric potato spindle tuber viroid (PSTV) RNAs are accurately processed in vitro to the monomeric circular viroid proper when incubated with a nuclear extract from healthy potato cells.

Authors:  M Tsagris; M Tabler; H P Mühlbach; H L Sänger
Journal:  EMBO J       Date:  1987-08       Impact factor: 11.598

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  59 in total

1.  Replication of avocado sunblotch viroid in the yeast Saccharomyces cerevisiae.

Authors:  Clémentine Delan-Forino; Marie-Christine Maurel; Claire Torchet
Journal:  J Virol       Date:  2011-01-26       Impact factor: 5.103

2.  Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity.

Authors:  Marcos De la Peña; Selma Gago; Ricardo Flores
Journal:  EMBO J       Date:  2003-10-15       Impact factor: 11.598

3.  Radiation target analysis of RNA.

Authors:  S L Benstein; E Kempner
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

Review 4.  Viroids: an Ariadne's thread into the RNA labyrinth.

Authors:  José-Antonio Daròs; Santiago F Elena; Ricardo Flores
Journal:  EMBO Rep       Date:  2006-06       Impact factor: 8.807

5.  Ribonuclease T1 generates circular RNA molecules from viroid-specific RNA transcripts by cleavage and intramolecular ligation.

Authors:  M Tsagris; M Tabler; H L Sänger
Journal:  Nucleic Acids Res       Date:  1991-04-11       Impact factor: 16.971

6.  Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA.

Authors:  S F Elena; J Dopazo; R Flores; T O Diener; A Moya
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

7.  RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript.

Authors:  B J Saville; R A Collins
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-01       Impact factor: 11.205

Review 8.  Ten reasons to exclude viruses from the tree of life.

Authors:  David Moreira; Purificación López-García
Journal:  Nat Rev Microbiol       Date:  2009-03-09       Impact factor: 60.633

9.  The RNA of both polarities of the peach latent mosaic viroid self-cleaves in vitro solely by single hammerhead structures.

Authors:  D Beaudry; F Busière; F Lareau; C Lessard; J P Perreault
Journal:  Nucleic Acids Res       Date:  1995-03-11       Impact factor: 16.971

Review 10.  Unveiling Human Non-Random Genome Editing Mechanisms Activated in Response to Chronic Environmental Changes: I. Where Might These Mechanisms Come from and What Might They Have Led To?

Authors:  Loris Zamai
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

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