Literature DB >> 15839707

Chemical shift anisotropy tensors of carbonyl, nitrogen, and amide proton nuclei in proteins through cross-correlated relaxation in NMR spectroscopy.

Karine Loth1, Philippe Pelupessy, Geoffrey Bodenhausen.   

Abstract

The principal components and orientations of the chemical shift anisotropy (CSA) tensors of the carbonyl (C'), nitrogen (N), and amide proton (H(N)) nuclei of 64 distinct amide bonds in human ubiquitin have been determined in isotropic solution by a set of 14 complementary auto- and cross-correlated relaxation rates involving the CSA interactions of the nuclei of interest and several dipole-dipole (DD) interactions. The CSA parameters thus obtained depend to some degree on the models used for local motions. Three cases have been considered: restricted isotropic diffusion, three-dimensional Gaussian axial fluctuations (3D-GAF), and independent out-of-plane motions of the NH(N) vectors with respect to the peptide planes.

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Year:  2005        PMID: 15839707     DOI: 10.1021/ja042863o

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  43 in total

1.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Andrew J Nieuwkoop; W Trent Franks; Eric Oldfield; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

2.  Comparison of fast backbone dynamics at amide nitrogen and carbonyl sites in dematin headpiece C-terminal domain and its S74E mutant.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Ying Li
Journal:  J Biomol NMR       Date:  2010-04-16       Impact factor: 2.835

Review 3.  Structural NMR of protein oligomers using hybrid methods.

Authors:  Xu Wang; Hsiau-Wei Lee; Yizhou Liu; James H Prestegard
Journal:  J Struct Biol       Date:  2010-11-11       Impact factor: 2.867

4.  A device for the measurement of residual chemical shift anisotropy and residual dipolar coupling in soluble and membrane-associated proteins.

Authors:  Yizhou Liu; James H Prestegard
Journal:  J Biomol NMR       Date:  2010-05-27       Impact factor: 2.835

5.  Effects of protein-pheromone complexation on correlated chemical shift modulations.

Authors:  Chiara Perazzolo; Julien Wist; Karine Loth; Luisa Poggi; Steve Homans; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

6.  Variability of the 15N chemical shielding tensors in the B3 domain of protein G from 15N relaxation measurements at several fields. Implications for backbone order parameters.

Authors:  Jennifer B Hall; David Fushman
Journal:  J Am Chem Soc       Date:  2006-06-21       Impact factor: 15.419

7.  Protein backbone dynamics through 13C'-13Calpha cross-relaxation in NMR spectroscopy.

Authors:  Fabien Ferrage; Philippe Pelupessy; David Cowburn; Geoffrey Bodenhausen
Journal:  J Am Chem Soc       Date:  2006-08-30       Impact factor: 15.419

8.  Quantifying Lipari-Szabo modelfree parameters from 13CO NMR relaxation experiments.

Authors:  Tianzhi Wang; Daniel S Weaver; Sheng Cai; Erik R P Zuiderweg
Journal:  J Biomol NMR       Date:  2006-09-22       Impact factor: 2.835

9.  Composite-180° pulse-based symmetry sequences to recouple proton chemical shift anisotropy tensors under ultrafast MAS solid-state NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Michal Malon; Ayyalusamy Ramamoorthy; Yusuke Nishiyama
Journal:  J Magn Reson       Date:  2014-11-18       Impact factor: 2.229

10.  A Magic-Angle Spinning NMR Method for the Site-Specific Measurement of Proton Chemical-Shift Anisotropy in Biological and Organic Solids.

Authors:  Guangjin Hou; Rupal Gupta; Tatyana Polenova; Alexander J Vega
Journal:  Isr J Chem       Date:  2014-02-01       Impact factor: 3.333

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