Literature DB >> 16880541

Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and an inhibitor.

Catherine Regni1, Grant S Shackelford, Lesa J Beamer.   

Abstract

Two complexes of the enzyme phosphomannomutase/phosphoglucomutase (PMM/PGM) from Pseudomonas aeruginosa with a slow substrate and with an inhibitor have been characterized by X-ray crystallography. Both ligands induce an interdomain rearrangement in the enzyme that creates a highly buried active site. Comparisons with enzyme-substrate complexes show that the inhibitor xylose 1-phosphate utilizes many of the previously observed enzyme-ligand interactions. In contrast, analysis of the ribose 1-phosphate complex reveals a combination of new and conserved enzyme-ligand interactions for binding. The ability of PMM/PGM to accommodate these two pentose phosphosugars in its active site may be relevant for future efforts towards inhibitor design.

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Year:  2006        PMID: 16880541      PMCID: PMC2242917          DOI: 10.1107/S1744309106025887

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  The Pseudomonas aeruginosa algC gene product participates in rhamnolipid biosynthesis.

Authors:  C Olvera; J B Goldberg; R Sánchez; G Soberón-Chávez
Journal:  FEMS Microbiol Lett       Date:  1999-10-01       Impact factor: 2.742

2.  Crystallization and initial crystallographic analysis of phosphomannomutase/phosphoglucomutase from Pseudomonas aeruginosa.

Authors:  C A Regni; P A Tipton; L J Beamer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-06

3.  Efficient anisotropic refinement of macromolecular structures using FFT.

Authors:  G N Murshudov; A A Vagin; A Lebedev; K S Wilson; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

4.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

5.  Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design.

Authors:  J Liang; H Edelsbrunner; C Woodward
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

6.  Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme.

Authors:  S Hayward; H J Berendsen
Journal:  Proteins       Date:  1998-02-01

7.  Kinetic mechanism and pH dependence of the kinetic parameters of Pseudomonas aeruginosa phosphomannomutase/phosphoglucomutase.

Authors:  L E Naught; P A Tipton
Journal:  Arch Biochem Biophys       Date:  2001-12-01       Impact factor: 4.013

8.  Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa.

Authors:  Catherine Regni; Laura Naught; Peter A Tipton; Lesa J Beamer
Journal:  Structure       Date:  2004-01       Impact factor: 5.006

9.  Purification and characterization of phosphomannomutase/phosphoglucomutase from Pseudomonas aeruginosa involved in biosynthesis of both alginate and lipopolysaccharide.

Authors:  R W Ye; N A Zielinski; A M Chakrabarty
Journal:  J Bacteriol       Date:  1994-08       Impact factor: 3.490

10.  Evolutionary trace analysis of the alpha-D-phosphohexomutase superfamily.

Authors:  Grant S Shackelford; Catherine A Regni; Lesa J Beamer
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

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  12 in total

1.  Breaking the covalent connection: Chain connectivity and the catalytic reaction of PMM/PGM.

Authors:  Andrew M Schramm; Dale Karr; Ritcha Mehra-Chaudhary; Steven R Van Doren; Cristina M Furdui; Lesa J Beamer
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

2.  Domain motion and interdomain hot spots in a multidomain enzyme.

Authors:  Gwo-Yu Chuang; Ritcha Mehra-Chaudhary; Chi-Ho Ngan; Brandon S Zerbe; Dima Kozakov; Sandor Vajda; Lesa J Beamer
Journal:  Protein Sci       Date:  2010-09       Impact factor: 6.725

3.  Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase.

Authors:  Yingying Lee; Maria T Villar; Antonio Artigues; Lesa J Beamer
Journal:  J Biol Chem       Date:  2014-01-08       Impact factor: 5.157

4.  Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect.

Authors:  Akella V S Sarma; Asokan Anbanandam; Allek Kelm; Ritcha Mehra-Chaudhary; Yirui Wei; Peiwu Qin; Yingying Lee; Mark V Berjanskii; Jacob A Mick; Lesa J Beamer; Steven R Van Doren
Journal:  Biochemistry       Date:  2012-01-17       Impact factor: 3.162

5.  Crystal structure of a bacterial phosphoglucomutase, an enzyme involved in the virulence of multiple human pathogens.

Authors:  Ritcha Mehra-Chaudhary; Jacob Mick; John J Tanner; Michael T Henzl; Lesa J Beamer
Journal:  Proteins       Date:  2011-01-18

6.  A coevolutionary residue network at the site of a functionally important conformational change in a phosphohexomutase enzyme family.

Authors:  Yingying Lee; Jacob Mick; Cristina Furdui; Lesa J Beamer
Journal:  PLoS One       Date:  2012-06-07       Impact factor: 3.240

7.  A novel N-terminal domain may dictate the glucose response of Mondo proteins.

Authors:  Lisa G McFerrin; William R Atchley
Journal:  PLoS One       Date:  2012-04-10       Impact factor: 3.240

8.  Genetic validation of Aspergillus fumigatus phosphoglucomutase as a viable therapeutic target in invasive aspergillosis.

Authors:  Kaizhou Yan; Mathew Stanley; Bartosz Kowalski; Olawale G Raimi; Andrew T Ferenbach; Pingzhen Wei; Wenxia Fang; Daan M F van Aalten
Journal:  J Biol Chem       Date:  2022-04-30       Impact factor: 5.486

9.  Multiple Ligand-Bound States of a Phosphohexomutase Revealed by Principal Component Analysis of NMR Peak Shifts.

Authors:  Jia Xu; Akella V S Sarma; Yirui Wei; Lesa J Beamer; Steven R Van Doren
Journal:  Sci Rep       Date:  2017-07-13       Impact factor: 4.379

10.  Herbaspirillum seropedicae strain HRC54 expression profile in response to sugarcane apoplastic fluid.

Authors:  Daniella Duarte Villarinho Pessoa; Carlos Magno Dos-Santos; Marcia Soares Vidal; José Ivo Baldani; Michelle Zibetti Tadra-Sfeir; Emanuel Maltempi de Souza; Jean Luis Simoes-Araujo
Journal:  3 Biotech       Date:  2021-05-24       Impact factor: 2.893

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