Literature DB >> 22242625

Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect.

Akella V S Sarma1, Asokan Anbanandam, Allek Kelm, Ritcha Mehra-Chaudhary, Yirui Wei, Peiwu Qin, Yingying Lee, Mark V Berjanskii, Jacob A Mick, Lesa J Beamer, Steven R Van Doren.   

Abstract

Phosphomannomutase/phosphoglucomutase contributes to the infectivity of Pseudomonas aeruginosa, retains and reorients its intermediate by 180°, and rotates domain 4 to close the deep catalytic cleft. Nuclear magnetic resonance (NMR) spectra of the backbone of wild-type and S108C-inactivated enzymes were assigned to at least 90%. (13)C secondary chemical shifts report excellent agreement of solution and crystallographic structure over the 14 α-helices, C-capping motifs, and 20 of the 22 β-strands. Major and minor NMR peaks implicate substates affecting 28% of assigned residues. These can be attributed to the phosphorylation state and possibly to conformational interconversions. The S108C substitution of the phosphoryl donor and acceptor slowed transformation of the glucose 1-phosphate substrate by impairing k(cat). Addition of the glucose 1,6-bisphosphate intermediate accelerated this reaction by 2-3 orders of magnitude, somewhat bypassing the defect and apparently relieving substrate inhibition. The S108C mutation perturbs the NMR spectra and electron density map around the catalytic cleft while preserving the secondary structure in solution. Diminished peak heights and faster (15)N relaxation suggest line broadening and millisecond fluctuations within four loops that can contact phosphosugars. (15)N NMR relaxation and peak heights suggest that domain 4 reorients slightly faster in solution than domains 1-3, and with a different principal axis of diffusion. This adds to the crystallographic evidence of domain 4 rotations in the enzyme, which were previously suggested to couple to reorientation of the intermediate, substrate binding, and product release.

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Year:  2012        PMID: 22242625      PMCID: PMC3448444          DOI: 10.1021/bi201609n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  44 in total

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Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

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Authors:  Eric B Bertelsen; Lyra Chang; Jason E Gestwicki; Erik R P Zuiderweg
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-13       Impact factor: 11.205

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Journal:  Nucleic Acids Res       Date:  2008-05-30       Impact factor: 16.971

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  7 in total

1.  Phosphorylation in the catalytic cleft stabilizes and attracts domains of a phosphohexomutase.

Authors:  Jia Xu; Yingying Lee; Lesa J Beamer; Steven R Van Doren
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

2.  Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase.

Authors:  Yingying Lee; Maria T Villar; Antonio Artigues; Lesa J Beamer
Journal:  J Biol Chem       Date:  2014-01-08       Impact factor: 5.157

3.  Biology, Mechanism, and Structure of Enzymes in the α-d-Phosphohexomutase Superfamily.

Authors:  Kyle M Stiers; Andrew G Muenks; Lesa J Beamer
Journal:  Adv Protein Chem Struct Biol       Date:  2017-05-17       Impact factor: 3.507

4.  Asp263 missense variants perturb the active site of human phosphoglucomutase 1.

Authors:  Kyle M Stiers; Abigail C Graham; Bailee N Kain; Lesa J Beamer
Journal:  FEBS J       Date:  2017-02-10       Impact factor: 5.542

5.  Chemical shift assignments of domain 4 from the phosphohexomutase from Pseudomonas aeruginosa suggest that freeing perturbs its coevolved domain interface.

Authors:  Yirui Wei; Thomas C Marcink; Jia Xu; Arthur G Sirianni; Akella V S Sarma; Stephen H Prior; Lesa J Beamer; Steven R Van Doren
Journal:  Biomol NMR Assign       Date:  2013-07-28       Impact factor: 0.746

6.  Data on the phosphorylation state of the catalytic serine of enzymes in the α-D-phosphohexomutase superfamily.

Authors:  Yingying Lee; Cristina Furdui; Lesa J Beamer
Journal:  Data Brief       Date:  2016-12-15

7.  Multiple Ligand-Bound States of a Phosphohexomutase Revealed by Principal Component Analysis of NMR Peak Shifts.

Authors:  Jia Xu; Akella V S Sarma; Yirui Wei; Lesa J Beamer; Steven R Van Doren
Journal:  Sci Rep       Date:  2017-07-13       Impact factor: 4.379

  7 in total

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