Literature DB >> 24403075

Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase.

Yingying Lee1, Maria T Villar, Antonio Artigues, Lesa J Beamer.   

Abstract

The enzyme phosphomannomutase/phosphoglucomutase (PMM/PGM) from Pseudomonas aeruginosa catalyzes an intramolecular phosphoryl transfer across its phosphosugar substrates, which are precursors in the synthesis of exoproducts involved in bacterial virulence. Previous structural studies of PMM/PGM have established a key role for conformational change in its multistep reaction, which requires a dramatic 180° reorientation of the intermediate within the active site. Here hydrogen-deuterium exchange by mass spectrometry and small angle x-ray scattering were used to probe the conformational flexibility of different forms of PMM/PGM in solution, including its active, phosphorylated state and the unphosphorylated state that occurs transiently during the catalytic cycle. In addition, the effects of ligand binding were assessed through use of a substrate analog. We found that both phosphorylation and binding of ligand produce significant effects on deuterium incorporation. Phosphorylation of the conserved catalytic serine has broad effects on residues in multiple domains and is supported by small angle x-ray scattering data showing that the unphosphorylated enzyme is less compact in solution. The effects of ligand binding are generally manifested near the active site cleft and at a domain interface that is a site of conformational change. These results suggest that dephosphorylation of the enzyme may play two critical functional roles: a direct role in the chemical step of phosphoryl transfer and secondly through propagation of structural flexibility. We propose a model whereby increased enzyme flexibility facilitates the reorientation of the reaction intermediate, coupling changes in structural dynamics with the unique catalytic mechanism of this enzyme.

Entities:  

Keywords:  Carbohydrate Biosynthesis; Enzyme Catalysis; Hydrogen-Deuterium Exchange; Phosphorylation; Protein Dynamics; Pseudomonas aeruginosa; Small Angle X-ray Scattering

Mesh:

Substances:

Year:  2014        PMID: 24403075      PMCID: PMC3931030          DOI: 10.1074/jbc.M113.532226

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  39 in total

1.  Crystallization and initial crystallographic analysis of phosphomannomutase/phosphoglucomutase from Pseudomonas aeruginosa.

Authors:  C A Regni; P A Tipton; L J Beamer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-06

2.  Efficient anisotropic refinement of macromolecular structures using FFT.

Authors:  G N Murshudov; A A Vagin; A Lebedev; K S Wilson; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

3.  Phosphorylation driven motions in the COOH-terminal Src kinase, CSK, revealed through enhanced hydrogen-deuterium exchange and mass spectrometry (DXMS).

Authors:  Yoshitomo Hamuro; Lilly Wong; Jennifer Shaffer; Jack S Kim; David D Stranz; Patricia A Jennings; Virgil L Woods; Joseph A Adams
Journal:  J Mol Biol       Date:  2002-11-08       Impact factor: 5.469

4.  A KINETIC STUDY OF THE PHOSPHOGLUCOMUTASE PATHWAY.

Authors:  W J RAY; G A ROSCELLI
Journal:  J Biol Chem       Date:  1964-04       Impact factor: 5.157

5.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

6.  Formation and reorientation of glucose 1,6-bisphosphate in the PMM/PGM reaction: transient-state kinetic studies.

Authors:  Laura E Naught; Peter A Tipton
Journal:  Biochemistry       Date:  2005-05-10       Impact factor: 3.162

7.  The reaction of phosphohexomutase from Pseudomonas aeruginosa: structural insights into a simple processive enzyme.

Authors:  Catherine Regni; Andrew M Schramm; Lesa J Beamer
Journal:  J Biol Chem       Date:  2006-04-04       Impact factor: 5.157

8.  Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors.

Authors:  Catherine Regni; Peter A Tipton; Lesa J Beamer
Journal:  Structure       Date:  2002-02       Impact factor: 5.006

9.  Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa.

Authors:  Catherine Regni; Laura Naught; Peter A Tipton; Lesa J Beamer
Journal:  Structure       Date:  2004-01       Impact factor: 5.006

10.  Evolutionary trace analysis of the alpha-D-phosphohexomutase superfamily.

Authors:  Grant S Shackelford; Catherine A Regni; Lesa J Beamer
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

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  8 in total

1.  Phosphorylation in the catalytic cleft stabilizes and attracts domains of a phosphohexomutase.

Authors:  Jia Xu; Yingying Lee; Lesa J Beamer; Steven R Van Doren
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

2.  Mechanistic Insights on Human Phosphoglucomutase Revealed by Transition Path Sampling and Molecular Dynamics Calculations.

Authors:  Natércia F Brás; Pedro A Fernandes; Maria J Ramos; Steven D Schwartz
Journal:  Chemistry       Date:  2018-01-04       Impact factor: 5.236

3.  Biology, Mechanism, and Structure of Enzymes in the α-d-Phosphohexomutase Superfamily.

Authors:  Kyle M Stiers; Andrew G Muenks; Lesa J Beamer
Journal:  Adv Protein Chem Struct Biol       Date:  2017-05-17       Impact factor: 3.507

Review 4.  Mutations in hereditary phosphoglucomutase 1 deficiency map to key regions of enzyme structure and function.

Authors:  Lesa J Beamer
Journal:  J Inherit Metab Dis       Date:  2014-08-29       Impact factor: 4.982

5.  Compromised catalysis and potential folding defects in in vitro studies of missense mutants associated with hereditary phosphoglucomutase 1 deficiency.

Authors:  Yingying Lee; Kyle M Stiers; Bailee N Kain; Lesa J Beamer
Journal:  J Biol Chem       Date:  2014-10-06       Impact factor: 5.157

Review 6.  Applications of hydrogen/deuterium exchange MS from 2012 to 2014.

Authors:  Gregory F Pirrone; Roxana E Iacob; John R Engen
Journal:  Anal Chem       Date:  2014-11-14       Impact factor: 6.986

7.  Data on the phosphorylation state of the catalytic serine of enzymes in the α-D-phosphohexomutase superfamily.

Authors:  Yingying Lee; Cristina Furdui; Lesa J Beamer
Journal:  Data Brief       Date:  2016-12-15

8.  Multiple Ligand-Bound States of a Phosphohexomutase Revealed by Principal Component Analysis of NMR Peak Shifts.

Authors:  Jia Xu; Akella V S Sarma; Yirui Wei; Lesa J Beamer; Steven R Van Doren
Journal:  Sci Rep       Date:  2017-07-13       Impact factor: 4.379

  8 in total

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