Literature DB >> 10089417

Efficient anisotropic refinement of macromolecular structures using FFT.

G N Murshudov1, A A Vagin, A Lebedev, K S Wilson, E J Dodson.   

Abstract

This paper gives the equations for the use of fast Fourier transformations in individual atomic anisotropic refinement. Restraints on bonded atoms, on the sphericity of each atom and between non-crystallographic symmetry related atoms are described. These have been implemented in the program REFMAC and its performance with several examples is analysed. All the tests show that anisotropic refinement not only reduces the R value and Rfree but also improves the fit to geometric targets, indicating that this parameterization is valuable for improving models derived from experimental data. The computer time taken is comparable to that for isotropic refinements.

Mesh:

Substances:

Year:  1999        PMID: 10089417     DOI: 10.1107/S090744499801405X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  416 in total

1.  The retro-GCN4 leucine zipper sequence forms a stable three-dimensional structure.

Authors:  P R Mittl; C Deillon; D Sargent; N Liu; S Klauser; R M Thomas; B Gutte; M G Grütter
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

2.  Streptococcus pneumonia YlxR at 1.35 A shows a putative new fold.

Authors:  J Osipiuk; P Górnicki; L Maj; I Dementieva; R Laskowski; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-10-25

3.  Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain.

Authors:  Alice Douangamath; Fabian V Filipp; André T J Klein; Phil Barnett; Peijian Zou; Tineke Voorn-Brouwer; M Cristina Vega; Olga M Mayans; Michael Sattler; Ben Distel; Matthias Wilmanns
Journal:  Mol Cell       Date:  2002-11       Impact factor: 17.970

4.  Structure of the sporulation-specific transcription factor Ndt80 bound to DNA.

Authors:  Jason S Lamoureux; David Stuart; Roger Tsang; Cynthia Wu; J N Mark Glover
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

5.  Consensus-derived structural determinants of the ankyrin repeat motif.

Authors:  Leila K Mosavi; Daniel L Minor; Zheng-Yu Peng
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

6.  Crystal structure of the mobile metallo-β-lactamase AIM-1 from Pseudomonas aeruginosa: insights into antibiotic binding and the role of Gln157.

Authors:  Hanna-Kirsti S Leiros; Pardha S Borra; Bjørn Olav Brandsdal; Kine Susann Waade Edvardsen; James Spencer; Timothy R Walsh; Orjan Samuelsen
Journal:  Antimicrob Agents Chemother       Date:  2012-06-04       Impact factor: 5.191

7.  Crystallization and X-ray structure of full-length recombinant human butyrylcholinesterase.

Authors:  Michelle N Ngamelue; Kohei Homma; Oksana Lockridge; Oluwatoyin A Asojo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-10

8.  Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase.

Authors:  Masahiro Fujihashi; Lianhu Wei; Lakshmi P Kotra; Emil F Pai
Journal:  J Mol Biol       Date:  2009-02-21       Impact factor: 5.469

9.  Structural and functional characterization of a noncanonical nucleoside triphosphate pyrophosphatase from Thermotoga maritima.

Authors:  Khaldeyah Awwad; Anna Desai; Clyde Smith; Monika Sommerhalter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-01-18

10.  Structure of rhodocetin reveals noncovalently bound heterodimer interface.

Authors:  Palasingam Paaventhan; Chunguang Kong; Jeremiah S Joseph; Max C M Chung; Prasanna R Kolatkar
Journal:  Protein Sci       Date:  2004-12-02       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.