Literature DB >> 16872276

Dihydrodipicolinate synthase from Thermotoga maritima.

F Grant Pearce1, Matthew A Perugini, Hannah J McKerchar, Juliet A Gerrard.   

Abstract

DHDPS (dihydrodipicolinate synthase) catalyses the branch point in lysine biosynthesis in bacteria and plants and is feedback inhibited by lysine. DHDPS from the thermophilic bacterium Thermotoga maritima shows a high level of heat and chemical stability. When incubated at 90 degrees C or in 8 M urea, the enzyme showed little or no loss of activity, unlike the Escherichia coli enzyme. The active site is very similar to that of the E. coli enzyme, and at mesophilic temperatures the two enzymes have similar kinetic constants. Like other forms of the enzyme, T. maritima DHDPS is a tetramer in solution, with a sedimentation coefficient of 7.2 S and molar mass of 133 kDa. However, the residues involved in the interface between different subunits in the tetramer differ from those of E. coli and include two cysteine residues poised to form a disulfide bond. Thus the increased heat and chemical stability of the T. maritima DHDPS enzyme is, at least in part, explained by an increased number of inter-subunit contacts. Unlike the plant or E. coli enzyme, the thermophilic DHDPS enzyme is not inhibited by (S)-lysine, suggesting that feedback control of the lysine biosynthetic pathway evolved later in the bacterial lineage.

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Year:  2006        PMID: 16872276      PMCID: PMC1652817          DOI: 10.1042/BJ20060771

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  42 in total

1.  Extremely thermostable D-glyceraldehyde-3-phosphate dehydrogenase from the eubacterium Thermotoga maritima.

Authors:  A Wrba; A Schweiger; V Schultes; R Jaenicke; P Závodszky
Journal:  Biochemistry       Date:  1990-08-21       Impact factor: 3.162

2.  Dihydrodipicolinate synthase ofnicotiana sylvestris, a chloroplast-localized enzyme of the lysine pathway.

Authors:  M Ghislain; V Frankard; M Jacobs
Journal:  Planta       Date:  1990-03       Impact factor: 4.116

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Authors:  Sarah J Roberts; Jonathan C Morris; Renwick C J Dobson; Juliet A Gerrard
Journal:  Bioorg Med Chem Lett       Date:  2003-01-20       Impact factor: 2.823

4.  The condensation step in diaminopimelate synthesis.

Authors:  Y Yugari; C Gilvarg
Journal:  J Biol Chem       Date:  1965-12       Impact factor: 5.157

5.  The lysine-dependent stimulation of lysine catabolism in tobacco seed requires calcium and protein phosphorylation.

Authors:  H Karchi; D Miron; S Ben-Yaacov; G Galili
Journal:  Plant Cell       Date:  1995-11       Impact factor: 11.277

6.  Partial purification and some properties of pyruvate-aspartic semialdehyde condensing enzyme from sporulating Bacillus subtilis.

Authors:  F Yamakura; Y Ikeda; K Kimura; T Sasakawa
Journal:  J Biochem       Date:  1974-09       Impact factor: 3.387

7.  Partial purification and characterization of dihydrodipicolinic acid synthetase from sporulating Bacillus megaterium.

Authors:  F H Webster; R V Lechowich
Journal:  J Bacteriol       Date:  1970-01       Impact factor: 3.490

Review 8.  New insights into the regulation and functional significance of lysine metabolism in plants.

Authors:  Gad Galili
Journal:  Annu Rev Plant Biol       Date:  2002       Impact factor: 26.379

9.  Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

Authors:  Dmitry A Rodionov; Alexey G Vitreschak; Andrey A Mironov; Mikhail S Gelfand
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

10.  The genomics of disulfide bonding and protein stabilization in thermophiles.

Authors:  Morgan Beeby; Brian D O'Connor; Carsten Ryttersgaard; Daniel R Boutz; L Jeanne Perry; Todd O Yeates
Journal:  PLoS Biol       Date:  2005-08-23       Impact factor: 8.029

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  29 in total

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Authors:  Sarah C Atkinson; Con Dogovski; Janet Newman; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

2.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the psychrophile Shewanella benthica.

Authors:  Jacinta M Wubben; Con Dogovski; Renwick C J Dobson; Rachel Codd; Juliet A Gerrard; Michael W Parker; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-29

3.  Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.

Authors:  Balasundaram Padmanabhan; Richard W Strange; Svetlana V Antonyuk; Mark J Ellis; S Samar Hasnain; Hitoshi Iino; Yoshihiro Agari; Yoshitaka Bessho; Shigeyuki Yokoyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-11-27

Review 4.  Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.

Authors:  Chien-Chi Lo; Carol A Bonner; Gary Xie; Mark D'Souza; Roy A Jensen
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5.  Crystallization of dihydrodipicolinate synthase from a clinical isolate of Streptococcus pneumoniae.

Authors:  Natalia E Sibarani; Michael A Gorman; Con Dogovski; Michael W Parker; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-12-25

6.  Characterization of a thermostable dihydrodipicolinate synthase from Thermoanaerobacter tengcongensis.

Authors:  Suzanne Wolterink-van Loo; Mark Levisson; Maud C Cabrières; Maurice C R Franssen; John van der Oost
Journal:  Extremophiles       Date:  2008-03-15       Impact factor: 2.395

7.  The high-resolution structure of dihydrodipicolinate synthase from Escherichia coli bound to its first substrate, pyruvate.

Authors:  Sean R A Devenish; Juliet A Gerrard; Geoffrey B Jameson; Renwick C J Dobson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-11-28

8.  KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials.

Authors:  Aarti Garg; Rupinder Tewari; Gajendra P S Raghava
Journal:  BMC Bioinformatics       Date:  2010-03-11       Impact factor: 3.169

9.  Insights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m1A57/58 methyltransferase.

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Journal:  Nucleic Acids Res       Date:  2010-05-18       Impact factor: 16.971

10.  Crystal structure and in silico studies of dihydrodipicolinate synthase (DHDPS) from Aquifex aeolicus.

Authors:  Upasana Sridharan; Akio Ebihara; Seiki Kuramitsu; Shigeyuki Yokoyama; Thirumananseri Kumarevel; Karthe Ponnuraj
Journal:  Extremophiles       Date:  2014-07-05       Impact factor: 2.395

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