Literature DB >> 20054116

Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.

Balasundaram Padmanabhan1, Richard W Strange, Svetlana V Antonyuk, Mark J Ellis, S Samar Hasnain, Hitoshi Iino, Yoshihiro Agari, Yoshitaka Bessho, Shigeyuki Yokoyama.   

Abstract

In bacteria and plants, dihydrodipicolinate synthase (DHDPS) plays a key role in the (S)-lysine biosynthesis pathway. DHDPS catalyzes the first step of the condensation of (S)-aspartate-beta-semialdehyde and pyruvate to form an unstable compound, (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid. The activity of DHDPS is allosterically regulated by (S)-lysine, a feedback inhibitor. The crystal structure of DHDPS from Methanocaldococcus jannaschii (MjDHDPS) was solved by the molecular-replacement method and was refined to 2.2 A resolution. The structure revealed that MjDHDPS forms a functional homotetramer, as also observed in Escherichia coli DHDPS, Thermotoga maritima DHDPS and Bacillus anthracis DHDPS. The binding-site region of MjDHDPS is essentially similar to those found in other known DHDPS structures.

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Year:  2009        PMID: 20054116      PMCID: PMC2802868          DOI: 10.1107/S174430910904651X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  The crystal structures of native and (S)-lysine-bound dihydrodipicolinate synthase from Escherichia coli with improved resolution show new features of biological significance.

Authors:  Renwick C J Dobson; Michael D W Griffin; Geoffrey B Jameson; Juliet A Gerrard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

8.  Protein structure comparison by alignment of distance matrices.

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Authors:  S Blickling; C Renner; B Laber; H D Pohlenz; T A Holak; R Huber
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Authors:  Renwick C J Dobson; Juliet A Gerrard; F Grant Pearce
Journal:  Biochem J       Date:  2004-02-01       Impact factor: 3.857

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  9 in total

1.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the grapevine Vitis vinifera.

Authors:  Sarah C Atkinson; Con Dogovski; Janet Newman; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

2.  Structure of the 4-hydroxy-tetrahydrodipicolinate synthase from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV and the phylogeny of the aminotransferase pathway.

Authors:  Rob A Schmitz; Andreas Dietl; Melanie Müller; Tom Berben; Huub J M Op den Camp; Thomas R M Barends
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-04-28       Impact factor: 1.056

3.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from Agrobacterium tumefaciens.

Authors:  Sarah C Atkinson; Con Dogovski; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-08-30

4.  Crystallization and preliminary X-ray diffraction analysis of dihydrodipicolinate synthase 2 from Arabidopsis thaliana.

Authors:  Michael D W Griffin; Jagan M Billakanti; Juliet A Gerrard; Renwick C J Dobson; F Grant Pearce
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-27

5.  Medicago truncatula dihydrodipicolinate synthase (DHDPS) enzymes display novel regulatory properties.

Authors:  Ellen Erzeel; Pieter Van Bochaute; Tran T Thu; Geert Angenon
Journal:  Plant Mol Biol       Date:  2013-01-18       Impact factor: 4.076

6.  Crystal structure and in silico studies of dihydrodipicolinate synthase (DHDPS) from Aquifex aeolicus.

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7.  Cloning to crystallization of dihydrodipicolinate synthase from the intracellular pathogen Legionella pneumophila.

Authors:  Tanzeela Siddiqui; Jason J Paxman; Con Dogovski; Santosh Panjikar; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-30

8.  Crystal, solution and in silico structural studies of dihydrodipicolinate synthase from the common grapevine.

Authors:  Sarah C Atkinson; Con Dogovski; Matthew T Downton; F Grant Pearce; Cyril F Reboul; Ashley M Buckle; Juliet A Gerrard; Renwick C J Dobson; John Wagner; Matthew A Perugini
Journal:  PLoS One       Date:  2012-06-25       Impact factor: 3.240

9.  From knock-out phenotype to three-dimensional structure of a promising antibiotic target from Streptococcus pneumoniae.

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  9 in total

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