Literature DB >> 18340401

Characterization of a thermostable dihydrodipicolinate synthase from Thermoanaerobacter tengcongensis.

Suzanne Wolterink-van Loo1, Mark Levisson, Maud C Cabrières, Maurice C R Franssen, John van der Oost.   

Abstract

Dihydrodipicolinate synthase (DHDPS) catalyses the first reaction of the (S)-lysine biosynthesis pathway in bacteria and plants. The hypothetical gene for dihydrodipicolinate synthase (dapA) of Thermoanaerobacter tengcongensis was found in a cluster containing several genes of the diaminopimelate lysine-synthesis pathway. The dapA gene was cloned in Escherichia coli, DHDPS was subsequently produced and purified to homogeneity. The T. tengcongensis DHDPS was found to be thermostable (T0.5=3 h at 90 degrees C). The specific condensation of pyruvate and (S)-aspartate-beta -semialdehyde was catalyzed optimally at 80 degrees C at pH 8.0. Enzyme kinetics were determined at 60 degrees C, as close as possible to in vivo conditions. The established kinetic parameters were in the same range as for example E. coli dihydrodipicolinate synthase. The specific activity of the T. tengcongensis DHDPS was relatively high even at 30 degrees C. Like most dihydrodipicolinate synthases known at present, the DHDPS of T. tengcongensis seems to be a tetramer. A structural model reveals that the active site is well conserved. The binding site of the allosteric inhibitor lysine appears not to be conserved, which agrees with the fact that the DHDPS of T. tengcongensis is not inhibited by lysine under physiological conditions.

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Year:  2008        PMID: 18340401     DOI: 10.1007/s00792-008-0152-z

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  35 in total

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Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

2.  Regulation of dihydrodipicolinate synthase during growth and sporulation of Bacillus cereus.

Authors:  D A Hoganson; D P Stahly
Journal:  J Bacteriol       Date:  1975-12       Impact factor: 3.490

3.  Dihydrodipicolinate synthase from Escherichia coli: pH dependent changes in the kinetic mechanism and kinetic mechanism of allosteric inhibition by L-lysine.

Authors:  W E Karsten
Journal:  Biochemistry       Date:  1997-02-18       Impact factor: 3.162

4.  The preparation of (S)-aspartate semi-aldehyde appropriate for use in biochemical studies.

Authors:  Sarah J Roberts; Jonathan C Morris; Renwick C J Dobson; Juliet A Gerrard
Journal:  Bioorg Med Chem Lett       Date:  2003-01-20       Impact factor: 2.823

5.  Molar absorptivities of beta-NADH and beta-NADPH.

Authors:  J Ziegenhorn; M Senn; T Bücher
Journal:  Clin Chem       Date:  1976-02       Impact factor: 8.327

6.  The condensation step in diaminopimelate synthesis.

Authors:  Y Yugari; C Gilvarg
Journal:  J Biol Chem       Date:  1965-12       Impact factor: 5.157

7.  Hydrogen exchange/electrospray ionization mass spectrometry studies of substrate and inhibitor binding and conformational changes of Escherichia coli dihydrodipicolinate reductase.

Authors:  F Wang; J S Blanchard; X J Tang
Journal:  Biochemistry       Date:  1997-04-01       Impact factor: 3.162

8.  xylA cloning and sequencing and biochemical characterization of xylose isomerase from Thermotoga neapolitana.

Authors:  C Vieille; J M Hess; R M Kelly; J G Zeikus
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

9.  A dinucleotide mutation in dihydrodipicolinate synthase of Nicotiana sylvestris leads to lysine overproduction.

Authors:  M Ghislain; V Frankard; M Jacobs
Journal:  Plant J       Date:  1995-11       Impact factor: 6.417

10.  Escherichia coli dihydrodipicolinate synthase. Identification of the active site and crystallization.

Authors:  B Laber; F X Gomis-Rüth; M J Romão; R Huber
Journal:  Biochem J       Date:  1992-12-01       Impact factor: 3.857

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  6 in total

Review 1.  Molecular evolution of an oligomeric biocatalyst functioning in lysine biosynthesis.

Authors:  Tatiana P Soares da Costa; Belinda M Abbott; Anthony R Gendall; Santosh Panjikar; Matthew A Perugini
Journal:  Biophys Rev       Date:  2017-12-05

2.  Medicago truncatula dihydrodipicolinate synthase (DHDPS) enzymes display novel regulatory properties.

Authors:  Ellen Erzeel; Pieter Van Bochaute; Tran T Thu; Geert Angenon
Journal:  Plant Mol Biol       Date:  2013-01-18       Impact factor: 4.076

3.  Substrate-mediated stabilization of a tetrameric drug target reveals Achilles heel in anthrax.

Authors:  Jarrod E Voss; Stephen W Scally; Nicole L Taylor; Sarah C Atkinson; Michael D W Griffin; Craig A Hutton; Michael W Parker; Malcolm R Alderton; Juliet A Gerrard; Renwick C J Dobson; Con Dogovski; Matthew A Perugini
Journal:  J Biol Chem       Date:  2009-11-30       Impact factor: 5.157

Review 4.  DHAP-dependent aldolases from (hyper)thermophiles: biochemistry and applications.

Authors:  Pierpaolo Falcicchio; Suzanne Wolterink-Van Loo; Maurice C R Franssen; John van der Oost
Journal:  Extremophiles       Date:  2013-10-29       Impact factor: 2.395

5.  Crystallization and preliminary X-ray analysis of dihydrodipicolinate synthase from Clostridium botulinum in the presence of its substrate pyruvate.

Authors:  Sarah C Atkinson; Renwick C J Dobson; Janet M Newman; Michael A Gorman; Con Dogovski; Michael W Parker; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-14

6.  Expression, purification, crystallization and preliminary X-ray diffraction analysis of dihydrodipicolinate synthase from Bacillus anthracis in the presence of pyruvate.

Authors:  Jarrod E Voss; Stephen W Scally; Nicole L Taylor; Con Dogovski; Malcolm R Alderton; Craig A Hutton; Juliet A Gerrard; Michael W Parker; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-31
  6 in total

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