Literature DB >> 16828167

Spike sorting: Bayesian clustering of non-stationary data.

Aharon Bar-Hillel1, Adam Spiro, Eran Stark.   

Abstract

Spike sorting involves clustering spikes recorded by a micro-electrode according to the source neurons. It is a complicated task, which requires much human labor, in part due to the non-stationary nature of the data. We propose to automate the clustering process in a Bayesian framework, with the source neurons modeled as a non-stationary mixture-of-Gaussians. At a first search stage, the data are divided into short time frames, and candidate descriptions of the data as mixtures-of-Gaussians are computed for each frame separately. At a second stage, transition probabilities between candidate mixtures are computed, and a globally optimal clustering solution is found as the maximum-a-posteriori solution of the resulting probabilistic model. The transition probabilities are computed using local stationarity assumptions, and are based on a Gaussian version of the Jensen-Shannon divergence. We employ synthetically generated spike data to illustrate the method and show that it outperforms other spike sorting methods in a non-stationary scenario. We then use real spike data and find high agreement of the method with expert human sorters in two modes of operation: a fully unsupervised and a semi-supervised mode. Thus, this method differs from other methods in two aspects: its ability to account for non-stationary data, and its close to human performance.

Entities:  

Mesh:

Year:  2006        PMID: 16828167     DOI: 10.1016/j.jneumeth.2006.04.023

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  15 in total

1.  Spatial receptive field shift by preceding cross-modal stimulation in the cat superior colliculus.

Authors:  Jinghong Xu; Tingting Bi; Jing Wu; Fanzhu Meng; Kun Wang; Jiawei Hu; Xiao Han; Jiping Zhang; Xiaoming Zhou; Les Keniston; Liping Yu
Journal:  J Physiol       Date:  2018-09-15       Impact factor: 5.182

2.  A real-time spike classification method based on dynamic time warping for extracellular enteric neural recording with large waveform variability.

Authors:  Yingqiu Cao; Nikolai Rakhilin; Philip H Gordon; Xiling Shen; Edwin C Kan
Journal:  J Neurosci Methods       Date:  2015-12-21       Impact factor: 2.390

3.  An automatic measure for classifying clusters of suspected spikes into single cells versus multiunits.

Authors:  Ariel Tankus; Yehezkel Yeshurun; Itzhak Fried
Journal:  J Neural Eng       Date:  2009-08-07       Impact factor: 5.379

Review 4.  Towards reliable spike-train recordings from thousands of neurons with multielectrodes.

Authors:  Gaute T Einevoll; Felix Franke; Espen Hagen; Christophe Pouzat; Kenneth D Harris
Journal:  Curr Opin Neurobiol       Date:  2011-10-22       Impact factor: 6.627

Review 5.  Improving data quality in neuronal population recordings.

Authors:  Kenneth D Harris; Rodrigo Quian Quiroga; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

6.  Optimizing the automatic selection of spike detection thresholds using a multiple of the noise level.

Authors:  Michael Rizk; Patrick D Wolf
Journal:  Med Biol Eng Comput       Date:  2009-02-10       Impact factor: 2.602

7.  Localizing the human primary auditory cortex in vivo using structural MRI.

Authors:  Christian Wasserthal; André Brechmann; Jörg Stadler; Bruce Fischl; Karin Engel
Journal:  Neuroimage       Date:  2013-07-25       Impact factor: 6.556

8.  Model-based spike sorting with a mixture of drifting t-distributions.

Authors:  Kevin Q Shan; Evgueniy V Lubenov; Athanassios G Siapas
Journal:  J Neurosci Methods       Date:  2017-06-23       Impact factor: 2.390

9.  Spike sorting of heterogeneous neuron types by multimodality-weighted PCA and explicit robust variational Bayes.

Authors:  Takashi Takekawa; Yoshikazu Isomura; Tomoki Fukai
Journal:  Front Neuroinform       Date:  2012-03-19       Impact factor: 4.081

10.  A Fully Automated Approach to Spike Sorting.

Authors:  Jason E Chung; Jeremy F Magland; Alex H Barnett; Vanessa M Tolosa; Angela C Tooker; Kye Y Lee; Kedar G Shah; Sarah H Felix; Loren M Frank; Leslie F Greengard
Journal:  Neuron       Date:  2017-09-13       Impact factor: 17.173

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