Literature DB >> 19667458

An automatic measure for classifying clusters of suspected spikes into single cells versus multiunits.

Ariel Tankus1, Yehezkel Yeshurun, Itzhak Fried.   

Abstract

While automatic spike sorting has been investigated for decades, little attention has been allotted to consistent evaluation criteria that will automatically determine whether a cluster of spikes represents the activity of a single cell or a multiunit. Consequently, the main tool for evaluation has remained visual inspection by a human. This paper quantifies the visual inspection process. The results are well-defined criteria for evaluation, which are mainly based on visual features of the spike waveform, and an automatic adaptive algorithm that learns the classification by a given human and can apply similar visual characteristics for classification of new data. To evaluate the suggested criteria, we recorded the activity of 1652 units (single cells and multiunits) from the cerebrum of 12 human patients undergoing evaluation for epilepsy surgery requiring implantation of chronic intracranial depth electrodes. The proposed method performed similar to human classifiers and obtained significantly higher accuracy than two existing methods (three variants of each). Evaluation on two synthetic datasets is also provided. The criteria are suggested as a standard for evaluation of the quality of separation that will allow comparison between different studies. The proposed algorithm is suitable for real-time operation and as such may allow brain-computer interfaces to treat single cells differently than multiunits.

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Year:  2009        PMID: 19667458      PMCID: PMC2837589          DOI: 10.1088/1741-2560/6/5/056001

Source DB:  PubMed          Journal:  J Neural Eng        ISSN: 1741-2552            Impact factor:   5.379


  42 in total

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Authors:  Hidekazu Kaneko; Hiroshi Tamura; Shinya S Suzuki
Journal:  IEEE Trans Biomed Eng       Date:  2007-02       Impact factor: 4.538

2.  Predicting movement from multiunit activity.

Authors:  Eran Stark; Moshe Abeles
Journal:  J Neurosci       Date:  2007-08-01       Impact factor: 6.167

3.  Automated spike sorting using density grid contour clustering and subtractive waveform decomposition.

Authors:  Carlos Vargas-Irwin; John P Donoghue
Journal:  J Neurosci Methods       Date:  2007-04-12       Impact factor: 2.390

4.  Spike sorting based on multi-class support vector machine with superposition resolution.

Authors:  Weidong Ding; Jingqi Yuan
Journal:  Med Biol Eng Comput       Date:  2007-09-15       Impact factor: 2.602

5.  Quantifying the isolation quality of extracellularly recorded action potentials.

Authors:  Mati Joshua; Shlomo Elias; Odeya Levine; Hagai Bergman
Journal:  J Neurosci Methods       Date:  2007-03-24       Impact factor: 2.390

6.  Cortical control of a prosthetic arm for self-feeding.

Authors:  Meel Velliste; Sagi Perel; M Chance Spalding; Andrew S Whitford; Andrew B Schwartz
Journal:  Nature       Date:  2008-05-28       Impact factor: 49.962

7.  Robust unsupervised detection of action potentials with probabilistic models.

Authors:  Raul Benitez; Zoran Nenadic
Journal:  IEEE Trans Biomed Eng       Date:  2008-04       Impact factor: 4.538

8.  Neuronal ensemble control of prosthetic devices by a human with tetraplegia.

Authors:  Leigh R Hochberg; Mijail D Serruya; Gerhard M Friehs; Jon A Mukand; Maryam Saleh; Abraham H Caplan; Almut Branner; David Chen; Richard D Penn; John P Donoghue
Journal:  Nature       Date:  2006-07-13       Impact factor: 49.962

9.  Human single-neuron responses at the threshold of conscious recognition.

Authors:  R Quian Quiroga; R Mukamel; E A Isham; R Malach; I Fried
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-25       Impact factor: 11.205

10.  Online detection and sorting of extracellularly recorded action potentials in human medial temporal lobe recordings, in vivo.

Authors:  Ueli Rutishauser; Erin M Schuman; Adam N Mamelak
Journal:  J Neurosci Methods       Date:  2006-02-20       Impact factor: 2.390

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  12 in total

1.  Adult cortical plasticity studied with chronically implanted electrode arrays.

Authors:  Hiroshi Abe; Justin N J McManus; Nirmala Ramalingam; Wu Li; Sally A Marik; Stephan Meyer Zum Alten Borgloh; Charles D Gilbert
Journal:  J Neurosci       Date:  2015-02-11       Impact factor: 6.167

2.  Internally generated preactivation of single neurons in human medial frontal cortex predicts volition.

Authors:  Itzhak Fried; Roy Mukamel; Gabriel Kreiman
Journal:  Neuron       Date:  2011-02-10       Impact factor: 17.173

3.  A Discussion of Machine Learning Approaches for Clinical Prediction Modeling.

Authors:  Michael C Jin; Adrian J Rodrigues; Michael Jensen; Anand Veeravagu
Journal:  Acta Neurochir Suppl       Date:  2022

Review 4.  Percepts to recollections: insights from single neuron recordings in the human brain.

Authors:  Nanthia Suthana; Itzhak Fried
Journal:  Trends Cogn Sci       Date:  2012-07-12       Impact factor: 20.229

5.  A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis.

Authors:  Giulia Regalia; Stefania Coelli; Emilia Biffi; Giancarlo Ferrigno; Alessandra Pedrocchi
Journal:  Comput Intell Neurosci       Date:  2016-04-27

6.  Subthalamic Neurons Encode Both Single- and Multi-Limb Movements in Parkinson's Disease Patients.

Authors:  Ariel Tankus; Ido Strauss; Tanya Gurevich; Anat Mirelman; Nir Giladi; Itzhak Fried; Jeffrey M Hausdorff
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

7.  Structured neuronal encoding and decoding of human speech features.

Authors:  Ariel Tankus; Itzhak Fried; Shy Shoham
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

8.  Inhibitory control and error monitoring by human subthalamic neurons.

Authors:  J Bastin; M Polosan; D Benis; L Goetz; M Bhattacharjee; B Piallat; A Krainik; T Bougerol; S Chabardès; O David
Journal:  Transl Psychiatry       Date:  2014-09-09       Impact factor: 6.222

9.  Local Fields in Human Subthalamic Nucleus Track the Lead-up to Impulsive Choices.

Authors:  John M Pearson; Patrick T Hickey; Shivanand P Lad; Michael L Platt; Dennis A Turner
Journal:  Front Neurosci       Date:  2017-11-23       Impact factor: 4.677

10.  Sparse decoding of multiple spike trains for brain-machine interfaces.

Authors:  Ariel Tankus; Itzhak Fried; Shy Shoham
Journal:  J Neural Eng       Date:  2012-09-06       Impact factor: 5.379

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