Literature DB >> 22023727

Towards reliable spike-train recordings from thousands of neurons with multielectrodes.

Gaute T Einevoll1, Felix Franke, Espen Hagen, Christophe Pouzat, Kenneth D Harris.   

Abstract

The new generation of silicon-based multielectrodes comprising hundreds or more electrode contacts offers unprecedented possibilities for simultaneous recordings of spike trains from thousands of neurons. Such data will not only be invaluable for finding out how neural networks in the brain work, but will likely be important also for neural prosthesis applications. This opportunity can only be realized if efficient, accurate and validated methods for automatic spike sorting are provided. In this review we describe some of the challenges that must be met to achieve this goal, and in particular argue for the critical need of realistic model data to be used as ground truth in the validation of spike-sorting algorithms.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22023727      PMCID: PMC3314330          DOI: 10.1016/j.conb.2011.10.001

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  39 in total

1.  Interaction between spike waveform classification and temporal sequence detection.

Authors:  M C Quirk; M A Wilson
Journal:  J Neurosci Methods       Date:  1999-12-15       Impact factor: 2.390

2.  Spike sorting based on discrete wavelet transform coefficients.

Authors:  J C Letelier; P P Weber
Journal:  J Neurosci Methods       Date:  2000-09-15       Impact factor: 2.390

3.  Electrical interactions via the extracellular potential near cell bodies.

Authors:  G R Holt; C Koch
Journal:  J Comput Neurosci       Date:  1999 Mar-Apr       Impact factor: 1.621

4.  On the variability of manual spike sorting.

Authors:  Frank Wood; Michael J Black; Carlos Vargas-Irwin; Matthew Fellows; John P Donoghue
Journal:  IEEE Trans Biomed Eng       Date:  2004-06       Impact factor: 4.538

5.  Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering.

Authors:  R Quian Quiroga; Z Nadasdy; Y Ben-Shaul
Journal:  Neural Comput       Date:  2004-08       Impact factor: 2.026

6.  Recording spikes from a large fraction of the ganglion cells in a retinal patch.

Authors:  Ronen Segev; Joe Goodhouse; Jason Puchalla; Michael J Berry
Journal:  Nat Neurosci       Date:  2004-10       Impact factor: 24.884

7.  A tool for synthesizing spike trains with realistic interference.

Authors:  Leslie S Smith; Nhamoinesu Mtetwa
Journal:  J Neurosci Methods       Date:  2006-08-02       Impact factor: 2.390

8.  Electrophysiology of a dendritic neuron model.

Authors:  W RALL
Journal:  Biophys J       Date:  1962-03       Impact factor: 4.033

9.  Variability of extracellular spike waveforms of cortical neurons.

Authors:  M S Fee; P P Mitra; D Kleinfeld
Journal:  J Neurophysiol       Date:  1996-12       Impact factor: 2.714

10.  Quality metrics to accompany spike sorting of extracellular signals.

Authors:  Daniel N Hill; Samar B Mehta; David Kleinfeld
Journal:  J Neurosci       Date:  2011-06-15       Impact factor: 6.167

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  77 in total

Review 1.  Recent progress in multi-electrode spike sorting methods.

Authors:  Baptiste Lefebvre; Pierre Yger; Olivier Marre
Journal:  J Physiol Paris       Date:  2017-03-02

Review 2.  Modelling and analysis of local field potentials for studying the function of cortical circuits.

Authors:  Gaute T Einevoll; Christoph Kayser; Nikos K Logothetis; Stefano Panzeri
Journal:  Nat Rev Neurosci       Date:  2013-11       Impact factor: 34.870

3.  SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance.

Authors:  Jasper Wouters; Fabian Kloosterman; Alexander Bertrand
Journal:  Neuroinformatics       Date:  2021-01

4.  Automated in vivo patch-clamp evaluation of extracellular multielectrode array spike recording capability.

Authors:  Brian D Allen; Caroline Moore-Kochlacs; Jacob G Bernstein; Justin P Kinney; Jorg Scholvin; Luís F Seoane; Chris Chronopoulos; Charlie Lamantia; Suhasa B Kodandaramaiah; Max Tegmark; Edward S Boyden
Journal:  J Neurophysiol       Date:  2018-07-11       Impact factor: 2.714

5.  Efficient neural spike sorting using data subdivision and unification.

Authors:  Masood Ul Hassan; Rakesh Veerabhadrappa; Asim Bhatti
Journal:  PLoS One       Date:  2021-02-10       Impact factor: 3.240

Review 6.  Future of seizure prediction and intervention: closing the loop.

Authors:  Vivek Nagaraj; Steven T Lee; Esther Krook-Magnuson; Ivan Soltesz; Pascal Benquet; Pedro P Irazoqui; Theoden I Netoff
Journal:  J Clin Neurophysiol       Date:  2015-06       Impact factor: 2.177

Review 7.  Improving data quality in neuronal population recordings.

Authors:  Kenneth D Harris; Rodrigo Quian Quiroga; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

Review 8.  A roadmap to integrate astrocytes into Systems Neuroscience.

Authors:  Ksenia V Kastanenka; Rubén Moreno-Bote; Maurizio De Pittà; Gertrudis Perea; Abel Eraso-Pichot; Roser Masgrau; Kira E Poskanzer; Elena Galea
Journal:  Glia       Date:  2019-05-06       Impact factor: 7.452

9.  Spike sorting of synchronous spikes from local neuron ensembles.

Authors:  Felix Franke; Robert Pröpper; Henrik Alle; Philipp Meier; Jörg R P Geiger; Klaus Obermayer; Matthias H J Munk
Journal:  J Neurophysiol       Date:  2015-08-19       Impact factor: 2.714

10.  Statistically Reconstructed Multiplexing for Very Dense, High-Channel-Count Acquisition Systems.

Authors:  David Tsai; Rafael Yuste; Kenneth L Shepard
Journal:  IEEE Trans Biomed Circuits Syst       Date:  2018-02       Impact factor: 3.833

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