Literature DB >> 16777600

Targeting of aberrant mRNAs to cytoplasmic processing bodies.

Ujwal Sheth1, Roy Parker.   

Abstract

In eukaryotes, a specialized pathway of mRNA degradation termed nonsense-mediated decay (NMD) functions in mRNA quality control by recognizing and degrading mRNAs with aberrant termination codons. We demonstrate that NMD in yeast targets premature termination codon (PTC)-containing mRNA to P-bodies. Upf1p is sufficient for targeting mRNAs to P-bodies, whereas Upf2p and Upf3p act, at least in part, downstream of P-body targeting to trigger decapping. The ATPase activity of Upf1p is required for NMD after the targeting of mRNAs to P-bodies. Moreover, Upf1p can target normal mRNAs to P-bodies but not promote their degradation. These observations lead us to propose a new model for NMD wherein two successive steps are used to distinguish normal and aberrant mRNAs.

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Year:  2006        PMID: 16777600      PMCID: PMC1858659          DOI: 10.1016/j.cell.2006.04.037

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

1.  Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping.

Authors:  D Muhlrad; R Parker
Journal:  Mol Biol Cell       Date:  1999-11       Impact factor: 4.138

Review 2.  Mechanisms of mRNA surveillance in eukaryotes.

Authors:  P Hilleren; R Parker
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

3.  Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies.

Authors:  Muriel Brengues; Daniela Teixeira; Roy Parker
Journal:  Science       Date:  2005-09-01       Impact factor: 47.728

4.  EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.

Authors:  Marc Bühler; Silvia Steiner; Fabio Mohn; Alexandra Paillusson; Oliver Mühlemann
Journal:  Nat Struct Mol Biol       Date:  2006-04-23       Impact factor: 15.369

5.  Upf1p, Nmd2p, and Upf3p regulate the decapping and exonucleolytic degradation of both nonsense-containing mRNAs and wild-type mRNAs.

Authors:  F He; A Jacobson
Journal:  Mol Cell Biol       Date:  2001-03       Impact factor: 4.272

6.  The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

Authors:  J M Coller; M Tucker; U Sheth; M A Valencia-Sanchez; R Parker
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

7.  Pre-mRNA processing factors are required for nuclear export.

Authors:  A S Brodsky; P A Silver
Journal:  RNA       Date:  2000-12       Impact factor: 4.942

8.  Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.

Authors:  Isao Kashima; Akio Yamashita; Natsuko Izumi; Naoyuki Kataoka; Ryo Morishita; Shinichi Hoshino; Mutsuhito Ohno; Gideon Dreyfuss; Shigeo Ohno
Journal:  Genes Dev       Date:  2006-02-01       Impact factor: 11.361

9.  Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p.

Authors:  A B Maderazo; F He; D A Mangus; A Jacobson
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

10.  The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay.

Authors:  C I González; M J Ruiz-Echevarría; S Vasudevan; M F Henry; S W Peltz
Journal:  Mol Cell       Date:  2000-03       Impact factor: 17.970

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  149 in total

1.  A genome-wide RNAi screen identifies genes regulating the formation of P bodies in C. elegans and their functions in NMD and RNAi.

Authors:  Yinyan Sun; Peiguo Yang; Yuxia Zhang; Xin Bao; Jun Li; Wenru Hou; Xiangyu Yao; Jinghua Han; Hong Zhang
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

Review 2.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 3.  NMD mechanism and the functions of Upf proteins in plant.

Authors:  Yiming Dai; Wenli Li; Lijia An
Journal:  Plant Cell Rep       Date:  2015-09-23       Impact factor: 4.570

4.  A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.

Authors:  Wenmin Xing; Denise Muhlrad; Roy Parker; Michael K Rosen
Journal:  Elife       Date:  2020-06-19       Impact factor: 8.140

Review 5.  Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis.

Authors:  Lawrence B Gardner
Journal:  Mol Cancer Res       Date:  2010-02-23       Impact factor: 5.852

6.  Inhibition of the ubiquitin-proteasome system induces stress granule formation.

Authors:  Rachid Mazroui; Sergio Di Marco; Randal J Kaufman; Imed-Eddine Gallouzi
Journal:  Mol Biol Cell       Date:  2007-05-02       Impact factor: 4.138

7.  Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae.

Authors:  Muriel Brengues; Roy Parker
Journal:  Mol Biol Cell       Date:  2007-05-02       Impact factor: 4.138

Review 8.  Deadenylation and P-bodies.

Authors:  Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

Review 9.  Relationship of GW/P-bodies with stress granules.

Authors:  Georg Stoecklin; Nancy Kedersha
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

10.  LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development.

Authors:  Carlos Perea-Resa; Tamara Hernández-Verdeja; Rosa López-Cobollo; María del Mar Castellano; Julio Salinas
Journal:  Plant Cell       Date:  2012-12-07       Impact factor: 11.277

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