Literature DB >> 16771661

Exact simulation of integrate-and-fire models with synaptic conductances.

Romain Brette1.   

Abstract

Computational neuroscience relies heavily on the simulation of large networks of neuron models. There are essentially two simulation strategies: (1) using an approximation method (e.g., Runge-Kutta) with spike times binned to the time step and (2) calculating spike times exactly in an event-driven fashion. In large networks, the computation time of the best algorithm for either strategy scales linearly with the number of synapses, but each strategy has its own assets and constraints: approximation methods can be applied to any model but are inexact; exact simulation avoids numerical artifacts but is limited to simple models. Previous work has focused on improving the accuracy of approximation methods. In this article, we extend the range of models that can be simulated exactly to a more realistic model: an integrate-and-fire model with exponential synaptic conductances.

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Year:  2006        PMID: 16771661     DOI: 10.1162/neco.2006.18.8.2004

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  14 in total

1.  Fast numerical methods for simulating large-scale integrate-and-fire neuronal networks.

Authors:  Aaditya V Rangan; David Cai
Journal:  J Comput Neurosci       Date:  2006-07-28       Impact factor: 1.621

Review 2.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

3.  Voltage-stepping schemes for the simulation of spiking neural networks.

Authors:  G Zheng; A Tonnelier; D Martinez
Journal:  J Comput Neurosci       Date:  2008-11-26       Impact factor: 1.621

4.  A Markovian event-based framework for stochastic spiking neural networks.

Authors:  Jonathan D Touboul; Olivier D Faugeras
Journal:  J Comput Neurosci       Date:  2011-04-16       Impact factor: 1.621

5.  Accuracy evaluation of numerical methods used in state-of-the-art simulators for spiking neural networks.

Authors:  Stephan Henker; Johannes Partzsch; René Schüffny
Journal:  J Comput Neurosci       Date:  2011-08-12       Impact factor: 1.621

6.  Distinct current modules shape cellular dynamics in model neurons.

Authors:  Adel Alturki; Feng Feng; Ajay Nair; Vinay Guntu; Satish S Nair
Journal:  Neuroscience       Date:  2016-08-13       Impact factor: 3.590

7.  A robust and biologically plausible spike pattern recognition network.

Authors:  Eric Larson; Ben P Perrone; Kamal Sen; Cyrus P Billimoria
Journal:  J Neurosci       Date:  2010-11-17       Impact factor: 6.167

8.  Spiking neural network simulation: numerical integration with the Parker-Sochacki method.

Authors:  Robert D Stewart; Wyeth Bair
Journal:  J Comput Neurosci       Date:  2009-01-17       Impact factor: 1.621

9.  Reducing the computational footprint for real-time BCPNN learning.

Authors:  Bernhard Vogginger; René Schüffny; Anders Lansner; Love Cederström; Johannes Partzsch; Sebastian Höppner
Journal:  Front Neurosci       Date:  2015-01-22       Impact factor: 4.677

10.  Time-warp-invariant neuronal processing.

Authors:  Robert Gütig; Haim Sompolinsky
Journal:  PLoS Biol       Date:  2009-07-07       Impact factor: 8.029

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