Literature DB >> 19034641

Voltage-stepping schemes for the simulation of spiking neural networks.

G Zheng1, A Tonnelier, D Martinez.   

Abstract

The numerical simulation of spiking neural networks requires particular attention. On the one hand, time-stepping methods are generic but they are prone to numerical errors and need specific treatments to deal with the discontinuities of integrate-and-fire models. On the other hand, event-driven methods are more precise but they are restricted to a limited class of neuron models. We present here a voltage-stepping scheme that combines the advantages of these two approaches and consists of a discretization of the voltage state-space. The numerical simulation is reduced to a local event-driven method that induces an implicit activity-dependent time discretization (time-steps automatically increase when the neuron is slowly varying). We show analytically that such a scheme leads to a high-order algorithm so that it accurately approximates the neuronal dynamics. The voltage-stepping method is generic and can be used to simulate any kind of neuron models. We illustrate it on nonlinear integrate-and-fire models and show that it outperforms time-stepping schemes of Runge-Kutta type in terms of simulation time and accuracy.

Mesh:

Year:  2008        PMID: 19034641     DOI: 10.1007/s10827-008-0119-1

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  28 in total

1.  Efficient event-driven simulation of large networks of spiking neurons and dynamical synapses.

Authors:  M Mattia; P Del Giudice
Journal:  Neural Comput       Date:  2000-10       Impact factor: 2.026

2.  Efficient and accurate time-stepping schemes for integrate-and-fire neuronal networks.

Authors:  M J Shelley; L Tao
Journal:  J Comput Neurosci       Date:  2001 Sep-Oct       Impact factor: 1.621

3.  Independent variable time-step integration of individual neurons for network simulations.

Authors:  William W Lytton; Michael L Hines
Journal:  Neural Comput       Date:  2005-04       Impact factor: 2.026

4.  Exact simulation of integrate-and-fire models with synaptic conductances.

Authors:  Romain Brette
Journal:  Neural Comput       Date:  2006-08       Impact factor: 2.026

5.  Event-driven simulation scheme for spiking neural networks using lookup tables to characterize neuronal dynamics.

Authors:  Eduardo Ros; Richard Carrillo; Eva M Ortigosa; Boris Barbour; Rodrigo Agís
Journal:  Neural Comput       Date:  2006-12       Impact factor: 2.026

6.  Event-driven simulations of nonlinear integrate-and-fire neurons.

Authors:  Arnaud Tonnelier; Hana Belmabrouk; Dominique Martinez
Journal:  Neural Comput       Date:  2007-12       Impact factor: 2.026

Review 7.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

8.  Exact simulation of integrate-and-fire models with exponential currents.

Authors:  Romain Brette
Journal:  Neural Comput       Date:  2007-10       Impact factor: 2.026

9.  Gamma oscillation by synaptic inhibition in a hippocampal interneuronal network model.

Authors:  X J Wang; G Buzsáki
Journal:  J Neurosci       Date:  1996-10-15       Impact factor: 6.167

Review 10.  On numerical simulations of integrate-and-fire neural networks.

Authors:  D Hansel; G Mato; C Meunier; L Neltner
Journal:  Neural Comput       Date:  1998-02-15       Impact factor: 2.026

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  2 in total

1.  A general and efficient method for incorporating precise spike times in globally time-driven simulations.

Authors:  Alexander Hanuschkin; Susanne Kunkel; Moritz Helias; Abigail Morrison; Markus Diesmann
Journal:  Front Neuroinform       Date:  2010-10-05       Impact factor: 4.081

2.  Perfect Detection of Spikes in the Linear Sub-threshold Dynamics of Point Neurons.

Authors:  Jeyashree Krishnan; PierGianLuca Porta Mana; Moritz Helias; Markus Diesmann; Edoardo Di Napoli
Journal:  Front Neuroinform       Date:  2018-01-05       Impact factor: 4.081

  2 in total

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