Literature DB >> 19151930

Spiking neural network simulation: numerical integration with the Parker-Sochacki method.

Robert D Stewart1, Wyeth Bair.   

Abstract

Mathematical neuronal models are normally expressed using differential equations. The Parker-Sochacki method is a new technique for the numerical integration of differential equations applicable to many neuronal models. Using this method, the solution order can be adapted according to the local conditions at each time step, enabling adaptive error control without changing the integration timestep. The method has been limited to polynomial equations, but we present division and power operations that expand its scope. We apply the Parker-Sochacki method to the Izhikevich 'simple' model and a Hodgkin-Huxley type neuron, comparing the results with those obtained using the Runge-Kutta and Bulirsch-Stoer methods. Benchmark simulations demonstrate an improved speed/accuracy trade-off for the method relative to these established techniques.

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Year:  2009        PMID: 19151930      PMCID: PMC2717378          DOI: 10.1007/s10827-008-0131-5

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  21 in total

1.  Intrinsic dynamics in neuronal networks. I. Theory.

Authors:  P E Latham; B J Richmond; P G Nelson; S Nirenberg
Journal:  J Neurophysiol       Date:  2000-02       Impact factor: 2.714

2.  Efficient event-driven simulation of large networks of spiking neurons and dynamical synapses.

Authors:  M Mattia; P Del Giudice
Journal:  Neural Comput       Date:  2000-10       Impact factor: 2.026

3.  SpikeNET: an event-driven simulation package for modelling large networks of spiking neurons.

Authors:  Arnaud Delorme; Simon J Thorpe
Journal:  Network       Date:  2003-11       Impact factor: 1.273

4.  Signal propagation and logic gating in networks of integrate-and-fire neurons.

Authors:  Tim P Vogels; L F Abbott
Journal:  J Neurosci       Date:  2005-11-16       Impact factor: 6.167

5.  Adaptive exponential integrate-and-fire model as an effective description of neuronal activity.

Authors:  Romain Brette; Wulfram Gerstner
Journal:  J Neurophysiol       Date:  2005-07-13       Impact factor: 2.714

6.  Exact simulation of integrate-and-fire models with synaptic conductances.

Authors:  Romain Brette
Journal:  Neural Comput       Date:  2006-08       Impact factor: 2.026

Review 7.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

8.  Exact simulation of integrate-and-fire models with exponential currents.

Authors:  Romain Brette
Journal:  Neural Comput       Date:  2007-10       Impact factor: 2.026

9.  A model of neuronal bursting using three coupled first order differential equations.

Authors:  J L Hindmarsh; R M Rose
Journal:  Proc R Soc Lond B Biol Sci       Date:  1984-03-22

10.  Gating of Shaker K+ channels: II. The components of gating currents and a model of channel activation.

Authors:  F Bezanilla; E Perozo; E Stefani
Journal:  Biophys J       Date:  1994-04       Impact factor: 4.033

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  4 in total

1.  Spiking neural network simulation: memory-optimal synaptic event scheduling.

Authors:  Robert D Stewart; Kevin N Gurney
Journal:  J Comput Neurosci       Date:  2010-11-03       Impact factor: 1.621

2.  EXPONENTIAL TIME DIFFERENCING FOR HODGKIN-HUXLEY-LIKE ODES.

Authors:  Christoph Börgers; Alexander R Nectow
Journal:  SIAM J Sci Comput       Date:  2013       Impact factor: 2.373

3.  Simulating the Cortical Microcircuit Significantly Faster Than Real Time on the IBM INC-3000 Neural Supercomputer.

Authors:  Arne Heittmann; Georgia Psychou; Guido Trensch; Charles E Cox; Winfried W Wilcke; Markus Diesmann; Tobias G Noll
Journal:  Front Neurosci       Date:  2022-01-20       Impact factor: 4.677

4.  Toward Building Hybrid Biological/in silico Neural Networks for Motor Neuroprosthetic Control.

Authors:  Mehmet Kocaturk; Halil Ozcan Gulcur; Resit Canbeyli
Journal:  Front Neurorobot       Date:  2015-08-11       Impact factor: 2.650

  4 in total

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