Literature DB >> 21837455

Accuracy evaluation of numerical methods used in state-of-the-art simulators for spiking neural networks.

Stephan Henker1, Johannes Partzsch, René Schüffny.   

Abstract

With the various simulators for spiking neural networks developed in recent years, a variety of numerical solution methods for the underlying differential equations are available. In this article, we introduce an approach to systematically assess the accuracy of these methods. In contrast to previous investigations, our approach focuses on a completely deterministic comparison and uses an analytically solved model as a reference. This enables the identification of typical sources of numerical inaccuracies in state-of-the-art simulation methods. In particular, with our approach we can separate the error of the numerical integration from the timing error of spike detection and propagation, the latter being prominent in simulations with fixed timestep. To verify the correctness of the testing procedure, we relate the numerical deviations to theoretical predictions for the employed numerical methods. Finally, we give an example of the influence of simulation artefacts on network behaviour and spike-timing-dependent plasticity (STDP), underlining the importance of spike-time accuracy for the simulation of STDP.

Mesh:

Year:  2011        PMID: 21837455     DOI: 10.1007/s10827-011-0353-9

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  23 in total

1.  Efficient event-driven simulation of large networks of spiking neurons and dynamical synapses.

Authors:  M Mattia; P Del Giudice
Journal:  Neural Comput       Date:  2000-10       Impact factor: 2.026

2.  Efficient and accurate time-stepping schemes for integrate-and-fire neuronal networks.

Authors:  M J Shelley; L Tao
Journal:  J Comput Neurosci       Date:  2001 Sep-Oct       Impact factor: 1.621

Review 3.  Rallpacks: a set of benchmarks for neuronal simulators.

Authors:  U S Bhalla; D H Bilitch; J M Bower
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4.  Advancing the boundaries of high-connectivity network simulation with distributed computing.

Authors:  Abigail Morrison; Carsten Mehring; Theo Geisel; A D Aertsen; Markus Diesmann
Journal:  Neural Comput       Date:  2005-08       Impact factor: 2.026

5.  Exact simulation of integrate-and-fire models with synaptic conductances.

Authors:  Romain Brette
Journal:  Neural Comput       Date:  2006-08       Impact factor: 2.026

6.  Attractor dynamics in a modular network model of neocortex.

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Journal:  Network       Date:  2006-09       Impact factor: 1.273

7.  Triplets of spikes in a model of spike timing-dependent plasticity.

Authors:  Jean-Pascal Pfister; Wulfram Gerstner
Journal:  J Neurosci       Date:  2006-09-20       Impact factor: 6.167

Review 8.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

9.  The quantitative single-neuron modeling competition.

Authors:  Renaud Jolivet; Felix Schürmann; Thomas K Berger; Richard Naud; Wulfram Gerstner; Arnd Roth
Journal:  Biol Cybern       Date:  2008-11-15       Impact factor: 2.086

Review 10.  Phenomenological models of synaptic plasticity based on spike timing.

Authors:  Abigail Morrison; Markus Diesmann; Wulfram Gerstner
Journal:  Biol Cybern       Date:  2008-05-20       Impact factor: 2.086

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  4 in total

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2.  Performance Comparison of the Digital Neuromorphic Hardware SpiNNaker and the Neural Network Simulation Software NEST for a Full-Scale Cortical Microcircuit Model.

Authors:  Sacha J van Albada; Andrew G Rowley; Johanna Senk; Michael Hopkins; Maximilian Schmidt; Alan B Stokes; David R Lester; Markus Diesmann; Steve B Furber
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3.  A unified framework for spiking and gap-junction interactions in distributed neuronal network simulations.

Authors:  Jan Hahne; Moritz Helias; Susanne Kunkel; Jun Igarashi; Matthias Bolten; Andreas Frommer; Markus Diesmann
Journal:  Front Neuroinform       Date:  2015-09-09       Impact factor: 4.081

4.  Limits to high-speed simulations of spiking neural networks using general-purpose computers.

Authors:  Friedemann Zenke; Wulfram Gerstner
Journal:  Front Neuroinform       Date:  2014-09-11       Impact factor: 4.081

  4 in total

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