Literature DB >> 16714349

Role of solvent on protein-matrix coupling in MbCO embedded in water-saccharide systems: a Fourier transform infrared spectroscopy study.

Sergio Giuffrida1, Grazia Cottone, Lorenzo Cordone.   

Abstract

Embedding protein in sugar systems of low water content enables one to investigate the protein dynamic-structure function in matrixes whose rigidity is modulated by varying the content of residual water. Accordingly, studying the dynamics and structure thermal evolution of a protein in sugar systems of different hydration constitutes a tool for disentangling solvent rigidity from temperature effects. Furthermore, studies performed using different sugars may give information on how the detailed composition of the surrounding solvent affects the internal protein dynamics and structural evolution. In this work, we compare Fourier transform infrared spectroscopy measurements (300-20 K) on MbCO embedded in trehalose, sucrose, maltose, raffinose, and glucose matrixes of different water content. At all the water contents investigated, the protein-solvent coupling was tighter in trehalose than in the other sugars, thus suggesting a molecular basis for the trehalose peculiarity. These results are in line with the observation that protein-matrix phase separation takes place in lysozyme-lactose, whereas it is absent in lysozyme-trehalose systems; indeed, these behaviors may respectively be due to the lack or presence of suitable water-mediated hydrogen-bond networks, which match the protein surface to the surroundings. The above processes might be at the basis of pattern recognition in crowded living systems; indeed, hydration shells structural and dynamic matching is first needed for successful come together of interacting biomolecules.

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Year:  2006        PMID: 16714349      PMCID: PMC1563748          DOI: 10.1529/biophysj.106.081927

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  51 in total

1.  Geminate rebinding in trehalose-glass embedded myoglobins reveals residue-specific control of intramolecular trajectories.

Authors:  David Dantsker; Uri Samuni; Adam J Friedman; Ming Yang; Anandhi Ray; Joel M Friedman
Journal:  J Mol Biol       Date:  2002-01-11       Impact factor: 5.469

2.  A reduction of protein specific motions in co-ligated myoglobin embedded in a trehalose glass.

Authors:  L Cordone; P Galajda; E Vitrano; A Gassmann; A Ostermann; F Parak
Journal:  Eur Biophys J       Date:  1998       Impact factor: 1.733

3.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

4.  Protein and solvent dynamics: how strongly are they coupled?

Authors:  G Caliskan; D Mechtani; J H Roh; A Kisliuk; A P Sokolov; S Azzam; M T Cicerone; S Lin-Gibson; I Peral
Journal:  J Chem Phys       Date:  2004-07-22       Impact factor: 3.488

Review 5.  Internal dynamics and protein-matrix coupling in trehalose-coated proteins.

Authors:  Lorenzo Cordone; Grazia Cottone; Sergio Giuffrida; Gerardo Palazzo; Giovanni Venturoli; Cristiano Viappiani
Journal:  Biochim Biophys Acta       Date:  2005-04-15

6.  Light-induced protein-matrix uncoupling and protein relaxation in dry samples of trehalose-coated MbCO at room temperature.

Authors:  Stefania Abbruzzetti; Sergio Giuffrida; Silvia Sottini; Cristiano Viappiani; Lorenzo Cordone
Journal:  Cell Biochem Biophys       Date:  2005       Impact factor: 2.194

7.  A solid-state NMR study of protein mobility in lyophilized protein-sugar powders.

Authors:  Yuen-Han Lam; Rana Bustami; Tung Phan; Hak-Kim Chan; Frances Separovic
Journal:  J Pharm Sci       Date:  2002-04       Impact factor: 3.534

8.  Protective effect of disaccharides on restriction endonucleases during drying under vacuum.

Authors:  M Uritani; M Takai; K Yoshinaga
Journal:  J Biochem       Date:  1995-04       Impact factor: 3.387

9.  Heme-solvent coupling: a Mössbauer study of myoglobin in sucrose.

Authors:  H Lichtenegger; W Doster; T Kleinert; A Birk; B Sepiol; G Vogl
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

10.  Preservation of membranes in anhydrobiotic organisms: the role of trehalose.

Authors:  J H Crowe; L M Crowe; D Chapman
Journal:  Science       Date:  1984-02-17       Impact factor: 47.728

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  10 in total

Review 1.  Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins.

Authors:  Uri Samuni; David Dantsker; Camille J Roche; Joel M Friedman
Journal:  Gene       Date:  2007-05-10       Impact factor: 3.688

2.  GFP-mut2 proteins in trehalose-water matrixes: spatially heterogeneous protein-water-sugar structures.

Authors:  Laura D'Alfonso; Maddalena Collini; Fabio Cannone; Giuseppe Chirico; Barbara Campanini; Grazia Cottone; Lorenzo Cordone
Journal:  Biophys J       Date:  2007-04-06       Impact factor: 4.033

3.  Hydration dependent dynamics in sol-gel encapsulated myoglobin.

Authors:  Giorgio Schirò; Michele Sclafani; Francesca Natali; Antonio Cupane
Journal:  Eur Biophys J       Date:  2008-02-01       Impact factor: 1.733

4.  Hydration dynamics in a partially denatured ensemble of the globular protein human alpha-lactalbumin investigated with molecular dynamics simulations.

Authors:  Neelanjana Sengupta; Simon Jaud; Douglas J Tobias
Journal:  Biophys J       Date:  2008-09-05       Impact factor: 4.033

Review 5.  Stability of protein pharmaceuticals: an update.

Authors:  Mark Cornell Manning; Danny K Chou; Brian M Murphy; Robert W Payne; Derrick S Katayama
Journal:  Pharm Res       Date:  2010-02-09       Impact factor: 4.200

6.  SAXS study on myoglobin embedded in amorphous saccharide matrices.

Authors:  S Giuffrida; M Panzica; F M Giordano; A Longo
Journal:  Eur Phys J E Soft Matter       Date:  2011-09-22       Impact factor: 1.890

7.  Proteins in amorphous saccharide matrices: structural and dynamical insights on bioprotection.

Authors:  S Giuffrida; G Cottone; G Bellavia; L Cordone
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-17       Impact factor: 1.890

8.  Coupling of protein and hydration-water dynamics in biological membranes.

Authors:  K Wood; M Plazanet; F Gabel; B Kessler; D Oesterhelt; D J Tobias; G Zaccai; M Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-06       Impact factor: 11.205

9.  Dynamics of C-phycocyanin in various deuterated trehalose/water environments measured by quasielastic and elastic neutron scattering.

Authors:  Ingo Köper; Sophie Combet; Winfried Petry; Marie-Claire Bellissent-Funel
Journal:  Eur Biophys J       Date:  2008-01-08       Impact factor: 1.733

10.  Separation of saccharides using fullerene-bonded silica monolithic columns via π interactions in liquid chromatography.

Authors:  Hiroshi Kobayashi; Kazuya Okada; Shinnosuke Tokuda; Eisuke Kanao; Yusuke Masuda; Toyohiro Naito; Hikaru Takaya; Mingdi Yan; Takuya Kubo; Koji Otsuka
Journal:  Sci Rep       Date:  2020-08-14       Impact factor: 4.379

  10 in total

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