Literature DB >> 16684934

Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes.

Kenneth L McNally1, Richard Bruskiewich, David Mackill, C Robin Buell, Jan E Leach, Hei Leung.   

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Year:  2006        PMID: 16684934      PMCID: PMC1459310          DOI: 10.1104/pp.106.077313

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


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  40 in total

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Review 2.  Accessing genetic variation: genotyping single nucleotide polymorphisms.

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3.  The cost of inbreeding in Arabidopsis.

Authors:  Carlos D Bustamante; Rasmus Nielsen; Stanley A Sawyer; Kenneth M Olsen; Michael D Purugganan; Daniel L Hartl
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Review 4.  Genome-wide association studies for common diseases and complex traits.

Authors:  Joel N Hirschhorn; Mark J Daly
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5.  A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Authors:  Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

Review 6.  Methods for genotyping single nucleotide polymorphisms.

Authors:  P Y Kwok
Journal:  Annu Rev Genomics Hum Genet       Date:  2001       Impact factor: 8.929

Review 7.  Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease.

Authors:  David Botstein; Neil Risch
Journal:  Nat Genet       Date:  2003-03       Impact factor: 38.330

8.  Rice mutant resources for gene discovery.

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Journal:  Plant Mol Biol       Date:  2004-02       Impact factor: 4.076

Review 9.  Corn and humans: recombination and linkage disequilibrium in two genomes of similar size.

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Journal:  Trends Genet       Date:  2004-02       Impact factor: 11.639

10.  Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse.

Authors:  Mathew T Pletcher; Philip McClurg; Serge Batalov; Andrew I Su; S Whitney Barnes; Erica Lagler; Ron Korstanje; Xiaosong Wang; Deborah Nusskern; Molly A Bogue; Richard J Mural; Beverly Paigen; Tim Wiltshire
Journal:  PLoS Biol       Date:  2004-11-09       Impact factor: 8.029

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  34 in total

1.  SIFT missense predictions for genomes.

Authors:  Robert Vaser; Swarnaseetha Adusumalli; Sim Ngak Leng; Mile Sikic; Pauline C Ng
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2.  Translational genomics for bioenergy production: there's room for more than one model.

Authors:  Daniel R Bush; Jan E Leach
Journal:  Plant Cell       Date:  2007-10       Impact factor: 11.277

3.  Genetic variation of NBS-LRR class resistance genes in rice lines.

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4.  Genetic and genomic approaches to develop rice germplasm for problem soils.

Authors:  Abdelbagi M Ismail; Sigrid Heuer; Michael J Thomson; Matthias Wissuwa
Journal:  Plant Mol Biol       Date:  2007-08-17       Impact factor: 4.076

5.  ISSR markers based on GA and AG repeats reveal genetic relationship among rice varieties tolerant to drought, flood, or salinity.

Authors:  Ch Surendhar Reddy; A Prasad Babu; B P Mallikarjuna Swamy; K Kaladhar; N Sarla
Journal:  J Zhejiang Univ Sci B       Date:  2009-02       Impact factor: 3.066

6.  Single feature polymorphisms between two rice cultivars detected using a median polish method.

Authors:  Weibo Xie; Ying Chen; Gang Zhou; Lei Wang; Chengjun Zhang; Jianwei Zhang; Jinghua Xiao; Tong Zhu; Qifa Zhang
Journal:  Theor Appl Genet       Date:  2009-04-16       Impact factor: 5.699

7.  Comparative genomics of grasses promises a bountiful harvest.

Authors:  Andrew H Paterson; John E Bowers; Frank A Feltus; Haibao Tang; Lifeng Lin; Xiyin Wang
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

8.  Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics.

Authors:  C Robin Buell
Journal:  Plant Physiol       Date:  2008-11-12       Impact factor: 8.340

Review 9.  Integrated genomics and molecular breeding approaches for dissecting the complex quantitative traits in crop plants.

Authors:  Alice Kujur; Maneesha S Saxena; Deepak Bajaj; Swarup K Parida
Journal:  J Biosci       Date:  2013-12       Impact factor: 1.826

10.  Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice.

Authors:  Takeshi Fukao; Tristan Harris; Julia Bailey-Serres
Journal:  Ann Bot       Date:  2008-09-29       Impact factor: 4.357

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