Literature DB >> 15284490

Rice mutant resources for gene discovery.

Hirohiko Hirochika1, Emmanuel Guiderdoni, Gynheung An, Yue-Ie Hsing, Moo Young Eun, Chang-Deok Han, Narayana Upadhyaya, Srinivasan Ramachandran, Qifa Zhang, Andy Pereira, Venkatesan Sundaresan, Hei Leung.   

Abstract

With the completion of genomic sequencing of rice, rice has been firmly established as a model organism for both basic and applied research. The next challenge is to uncover the functions of genes predicted by sequence analysis. Considering the amount of effort and the diversity of disciplines required for functional analyses, extensive international collaboration is needed for this next goal. The aims of this review are to summarize the current status of rice mutant resources, key tools for functional analysis of genes, and our perspectives on how to accelerate rice gene discovery through collaboration.

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Year:  2004        PMID： 15284490     DOI： 10.1023/B:PLAN.0000036368.74758.66

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  34 in total

1.  Molecular analysis of rice plants harboring an Ac/Ds transposable element-mediated gene trapping system.

Authors:  H G Chin; M S Choe; S H Lee; S H Park; J C Koo; N Y Kim; J J Lee; B G Oh; G H Yi; S C Kim; H C Choi; M J Cho; C D Han
Journal:  Plant J       Date:  1999-09       Impact factor: 6.417

2.  Frequency and pattern of transposition of the maize transposable element Ds in transgenic rice plants.

Authors:  Y Nakagawa; C Machida; Y Machida; K Toriyama
Journal:  Plant Cell Physiol       Date:  2000-06       Impact factor: 4.927

3.  Early and multiple Ac transpositions in rice suitable for efficient insertional mutagenesis.

Authors:  R Greco; P B Ouwerkerk; A J Taal; C Favalli; T Beguiristain; P Puigdomènech; L Colombo; J H Hoge; A Pereira
Journal:  Plant Mol Biol       Date:  2001-05       Impact factor: 4.076

4.  Plant tagnology.

Authors: 
Journal:  Trends Plant Sci       Date:  1999-03       Impact factor: 18.313

5.  The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice.

Authors:  Ken-Ichi Nonomura; Kazumaru Miyoshi; Mitsugu Eiguchi; Tadzunu Suzuki; Akio Miyao; Hirohiko Hirochika; Nori Kurata
Journal:  Plant Cell       Date:  2003-08       Impact factor: 11.277

6.  High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics.

Authors:  Christophe Sallaud; Céline Gay; Pierre Larmande; Martine Bès; Pietro Piffanelli; Benoit Piégu; Gaétan Droc; Farid Regad; Emmanuelle Bourgeois; Donaldo Meynard; Christophe Périn; Xavier Sabau; Alain Ghesquière; Jean Christophe Glaszmann; Michel Delseny; Emmanuel Guiderdoni
Journal:  Plant J       Date:  2004-08       Impact factor: 6.417

7.  A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Authors:  Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

8.  Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.

Authors:  Y Sato; N Sentoku; Y Miura; H Hirochika; H Kitano; M Matsuoka
Journal:  EMBO J       Date:  1999-02-15       Impact factor: 11.598

9.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

10.  Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences.

Authors:  Tatiana Kolesnik; Ildiko Szeverenyi; Doris Bachmann; Chellian Santhosh Kumar; Shuye Jiang; Rengasamy Ramamoorthy; Minnie Cai; Zhi Gang Ma; Venkatesan Sundaresan; Srinivasan Ramachandran
Journal:  Plant J       Date:  2004-01       Impact factor: 6.417
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  78 in total

1.  Transposition and target preferences of an active nonautonomous DNA transposon nDart1 and its relatives belonging to the hAT superfamily in rice.

Authors:  Kyoko Takagi; Masahiko Maekawa; Kazuo Tsugane; Shigeru Iida
Journal:  Mol Genet Genomics       Date:  2010-09-10       Impact factor: 3.291

2.  Application of T-DNA activation tagging to identify glutamate receptor-like genes that enhance drought tolerance in plants.

Authors:  Guihua Lu; Xiping Wang; Junhua Liu; Kun Yu; Yang Gao; Haiyan Liu; Changgui Wang; Wei Wang; Guokui Wang; Min Liu; Guanfan Mao; Binfeng Li; Jianying Qin; Mian Xia; Junli Zhou; Jingmei Liu; Shuqin Jiang; Hua Mo; Jinteng Cui; Nobuhiro Nagasawa; Shoba Sivasankar; Marc C Albertsen; Hajime Sakai; Barbara J Mazur; Michael W Lassner; Richard M Broglie
Journal:  Plant Cell Rep       Date:  2014-03-29       Impact factor: 4.570

3.  Modification of endogenous natural genes by gene targeting in rice and other higher plants.

Authors:  Shigeru Iida; Rie Terada
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

4.  EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice.

Authors:  L J G van Enckevort; Gaëtan Droc; Pietro Piffanelli; Raffaella Greco; Cyril Gagneur; Christele Weber; Víctor M González; Pere Cabot; Fabio Fornara; Stefano Berri; Berta Miro; Ping Lan; Marta Rafel; Teresa Capell; Pere Puigdomènech; Pieter B F Ouwerkerk; Annemarie H Meijer; Enrico Pe'; Lucia Colombo; Paul Christou; Emmanuel Guiderdoni; Andy Pereira
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

5.  Chemical- and irradiation-induced mutants of indica rice IR64 for forward and reverse genetics.

Authors:  Jian-Li Wu; Chanjian Wu; Cailin Lei; Marietta Baraoidan; Alicia Bordeos; Ma Reina Suzette Madamba; Marilou Ramos-Pamplona; Ramil Mauleon; Arlett Portugal; Victor Jun Ulat; Richard Bruskiewich; Guoliang Wang; Jan Leach; Gurdev Khush; Hei Leung
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

Review 6.  Reverse genetic approaches for functional genomics of rice.

Authors:  Gynheung An; Dong-Hoon Jeong; Ki-Hong Jung; Sichul Lee
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

7.  Dissociation (Ds) constructs, mapped Ds launch pads and a transiently-expressed transposase system suitable for localized insertional mutagenesis in rice.

Authors:  Narayana M Upadhyaya; Qian-Hao Zhu; Xue-Rong Zhou; Andrew L Eamens; Mohammad S Hoque; Kerrie Ramm; Ramannee Shivakkumar; Kathryn F Smith; Shu-Ting Pan; Suzhi Li; Kefan Peng; Song J Kim; Elizabeth S Dennis
Journal:  Theor Appl Genet       Date:  2006-02-28       Impact factor: 5.699

8.  A rice gene activation/knockout mutant resource for high throughput functional genomics.

Authors:  Yue-Ie Hsing; Chyr-Guan Chern; Ming-Jen Fan; Po-Chang Lu; Ku-Ting Chen; Shuen-Fang Lo; Peng-Kai Sun; Shin-Lon Ho; Kuo-Wei Lee; Yi-Chieh Wang; Wen-Lii Huang; Swee-Suak Ko; Shu Chen; Jyh-Long Chen; Chun-I Chung; Yao-Cheng Lin; Ai-Ling Hour; Yet-Walt Wang; Ya-Chi Chang; Min-Wei Tsai; Yi-Show Lin; Yin-Chin Chen; Hsing-Mu Yen; Charng-Pei Li; Chiu-Kai Wey; Ching-Shan Tseng; Ming-Hsing Lai; Sheng-Chung Huang; Liang-Jwu Chen; Su-May Yu
Journal:  Plant Mol Biol       Date:  2006-11-21       Impact factor: 4.076

9.  Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes.

Authors:  Kenneth L McNally; Richard Bruskiewich; David Mackill; C Robin Buell; Jan E Leach; Hei Leung
Journal:  Plant Physiol       Date:  2006-05       Impact factor: 8.340

Review 10.  Formation, maintenance and function of the shoot apical meristem in rice.

Authors:  Jun-ichi Itoh; Yutaka Sato; Yasuo Nagato; Makoto Matsuoka
Journal:  Plant Mol Biol       Date:  2006-04       Impact factor: 4.076
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