Literature DB >> 19005087

Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics.

C Robin Buell1.   

Abstract

Mesh:

Year:  2008        PMID: 19005087      PMCID: PMC2613712          DOI: 10.1104/pp.108.128926

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


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  23 in total

1.  The use of the Monsanto draft rice genome sequence in research.

Authors:  G F Barry
Journal:  Plant Physiol       Date:  2001-03       Impact factor: 8.340

2.  Enrichment of gene-coding sequences in maize by genome filtration.

Authors:  C A Whitelaw; W B Barbazuk; G Pertea; A P Chan; F Cheung; Y Lee; L Zheng; S van Heeringen; S Karamycheva; J L Bennetzen; P SanMiguel; N Lakey; J Bedell; Y Yuan; M A Budiman; A Resnick; S Van Aken; T Utterback; S Riedmuller; M Williams; T Feldblyum; K Schubert; R Beachy; C M Fraser; J Quackenbush
Journal:  Science       Date:  2003-12-19       Impact factor: 47.728

3.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Authors:  Brian J Haas; Arthur L Delcher; Stephen M Mount; Jennifer R Wortman; Roger K Smith; Linda I Hannick; Rama Maiti; Catherine M Ronning; Douglas B Rusch; Christopher D Town; Steven L Salzberg; Owen White
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

4.  Nested retrotransposons in the intergenic regions of the maize genome.

Authors:  P SanMiguel; A Tikhonov; Y K Jin; N Motchoulskaia; D Zakharov; A Melake-Berhan; P S Springer; K J Edwards; M Lee; Z Avramova; J L Bennetzen
Journal:  Science       Date:  1996-11-01       Impact factor: 47.728

Review 5.  Large-scale EST sequencing in rice.

Authors:  K Yamamoto; T Sasaki
Journal:  Plant Mol Biol       Date:  1997-09       Impact factor: 4.076

6.  A high-density rice genetic linkage map with 2275 markers using a single F2 population.

Authors:  Y Harushima; M Yano; A Shomura; M Sato; T Shimano; Y Kuboki; T Yamamoto; S Y Lin; B A Antonio; A Parco; H Kajiya; N Huang; K Yamamoto; Y Nagamura; N Kurata; G S Khush; T Sasaki
Journal:  Genetics       Date:  1998-01       Impact factor: 4.562

7.  Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression.

Authors:  R M Ewing; A Ben Kahla; O Poirot; F Lopez; S Audic; J M Claverie
Journal:  Genome Res       Date:  1999-10       Impact factor: 9.043

8.  A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Authors:  Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

9.  Maize genome sequencing by methylation filtration.

Authors:  Lance E Palmer; Pablo D Rabinowicz; Andrew L O'Shaughnessy; Vivekanand S Balija; Lidia U Nascimento; Sujit Dike; Melissa de la Bastide; Robert A Martienssen; W Richard McCombie
Journal:  Science       Date:  2003-12-19       Impact factor: 47.728

10.  Caenorhabditis elegans mutant allele identification by whole-genome sequencing.

Authors:  Sumeet Sarin; Snehit Prabhu; M Maggie O'Meara; Itsik Pe'er; Oliver Hobert
Journal:  Nat Methods       Date:  2008-08-01       Impact factor: 28.547

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  10 in total

1.  Splendor in the grasses.

Authors:  Elizabeth A Kellogg; C Robin Buell
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

2.  Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences.

Authors:  Zhenhua Peng; Tingting Lu; Lubin Li; Xiaohui Liu; Zhimin Gao; Tao Hu; Xuewen Yang; Qi Feng; Jianping Guan; Qijun Weng; Danlin Fan; Chuanrang Zhu; Ying Lu; Bin Han; Zehui Jiang
Journal:  BMC Plant Biol       Date:  2010-06-18       Impact factor: 4.215

Review 3.  Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome.

Authors:  Moon Young Kim; Sunghoon Lee; Kyujung Van; Tae-Hyung Kim; Soon-Chun Jeong; Ik-Young Choi; Dae-Soo Kim; Yong-Seok Lee; Daeui Park; Jianxin Ma; Woo-Yeon Kim; Byoung-Chul Kim; Sungjin Park; Kyung-A Lee; Dong Hyun Kim; Kil Hyun Kim; Jin Hee Shin; Young Eun Jang; Kyung Do Kim; Wei Xian Liu; Tanapon Chaisan; Yang Jae Kang; Yeong-Ho Lee; Kook-Hyung Kim; Jung-Kyung Moon; Jeremy Schmutz; Scott A Jackson; Jong Bhak; Suk-Ha Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-03       Impact factor: 11.205

4.  Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics.

Authors:  Pascal-Antoine Christin; Emanuela Samaritani; Blaise Petitpierre; Nicolas Salamin; Guillaume Besnard
Journal:  Genome Biol Evol       Date:  2009-07-20       Impact factor: 3.416

5.  Transcriptome sequencing and de novo analysis for Ma bamboo (Dendrocalamus latiflorus Munro) using the Illumina platform.

Authors:  Mingying Liu; Guirong Qiao; Jing Jiang; Huiqin Yang; Lihua Xie; Jinzhong Xie; Renying Zhuo
Journal:  PLoS One       Date:  2012-10-03       Impact factor: 3.240

6.  Conservation, rearrangement, and deletion of gene pairs during the evolution of four grass genomes.

Authors:  Nicholas Krom; Wusirika Ramakrishna
Journal:  DNA Res       Date:  2010-09-23       Impact factor: 4.458

7.  Evolution and expression of tandem duplicated maize flavonol synthase genes.

Authors:  María Lorena Falcone Ferreyra; María Isabel Casas; Julia Irene Questa; Andrea Lorena Herrera; Stacy Deblasio; Jing Wang; David Jackson; Erich Grotewold; Paula Casati
Journal:  Front Plant Sci       Date:  2012-05-25       Impact factor: 5.753

8.  Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics.

Authors:  Yi Zhao; Liang Tang; Zhe Li; Jinpu Jin; Jingchu Luo; Ge Gao
Journal:  BMC Evol Biol       Date:  2015-04-18       Impact factor: 3.260

9.  Signal integration on plant promoters: a case study in maize.

Authors:  Ina Horst; Louisa Heimann; Christoph Peterhansel
Journal:  Plant Signal Behav       Date:  2013-06-27

10.  Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation.

Authors:  Adrian Czaban; Sapna Sharma; Stephen L Byrne; Manuel Spannagl; Klaus F X Mayer; Torben Asp
Journal:  BMC Genomics       Date:  2015-03-28       Impact factor: 3.969

  10 in total

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