Literature DB >> 11935018

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Stephen A Goff1, Darrell Ricke, Tien-Hung Lan, Gernot Presting, Ronglin Wang, Molly Dunn, Jane Glazebrook, Allen Sessions, Paul Oeller, Hemant Varma, David Hadley, Don Hutchison, Chris Martin, Fumiaki Katagiri, B Markus Lange, Todd Moughamer, Yu Xia, Paul Budworth, Jingping Zhong, Trini Miguel, Uta Paszkowski, Shiping Zhang, Michelle Colbert, Wei-lin Sun, Lili Chen, Bret Cooper, Sylvia Park, Todd Charles Wood, Long Mao, Peter Quail, Rod Wing, Ralph Dean, Yeisoo Yu, Andrey Zharkikh, Richard Shen, Sudhir Sahasrabudhe, Alun Thomas, Rob Cannings, Alexander Gutin, Dmitry Pruss, Julia Reid, Sean Tavtigian, Jeff Mitchell, Glenn Eldredge, Terri Scholl, Rose Mary Miller, Satish Bhatnagar, Nils Adey, Todd Rubano, Nadeem Tusneem, Rosann Robinson, Jane Feldhaus, Teresita Macalma, Arnold Oliphant, Steven Briggs.   

Abstract

The genome of the japonica subspecies of rice, an important cereal and model monocot, was sequenced and assembled by whole-genome shotgun sequencing. The assembled sequence covers 93% of the 420-megabase genome. Gene predictions on the assembled sequence suggest that the genome contains 32,000 to 50,000 genes. Homologs of 98% of the known maize, wheat, and barley proteins are found in rice. Synteny and gene homology between rice and the other cereal genomes are extensive, whereas synteny with Arabidopsis is limited. Assignment of candidate rice orthologs to Arabidopsis genes is possible in many cases. The rice genome sequence provides a foundation for the improvement of cereals, our most important crops.

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Year:  2002        PMID: 11935018     DOI: 10.1126/science.1068275

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  1020 in total

1.  Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid.

Authors:  Jinping Hua; Yongzhong Xing; Weiren Wu; Caiguo Xu; Xinli Sun; Sibin Yu; Qifa Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

2.  A network of rice genes associated with stress response and seed development.

Authors:  Bret Cooper; Joseph D Clarke; Paul Budworth; Joel Kreps; Don Hutchison; Sylvia Park; Sonia Guimil; Molly Dunn; Peter Luginbühl; Cinzia Ellero; Stephen A Goff; Jane Glazebrook
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-08       Impact factor: 11.205

3.  The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.

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Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

4.  Diversity in nucleotide binding site-leucine-rich repeat genes in cereals.

Authors:  Jianfa Bai; Lourdes A Pennill; Jianchang Ning; Se Weon Lee; Jegadeesan Ramalingam; Craig A Webb; Bingyu Zhao; Qing Sun; James C Nelson; Jan E Leach; Scot H Hulbert
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

5.  Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.

Authors:  Yasuaki Kagaya; Tokunori Hobo; Michiharu Murata; Atushi Ban; Tsukaho Hattori
Journal:  Plant Cell       Date:  2002-12       Impact factor: 11.277

6.  Empty pericarp2 encodes a negative regulator of the heat shock response and is required for maize embryogenesis.

Authors:  Suneng Fu; Robert Meeley; Michael J Scanlon
Journal:  Plant Cell       Date:  2002-12       Impact factor: 11.277

7.  OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.

Authors:  Raquel Salvador-Guirao; Patricia Baldrich; Shiho Tomiyama; Yue-Ie Hsing; Kazunori Okada; Blanca San Segundo
Journal:  Ann Bot       Date:  2019-01-01       Impact factor: 4.357

8.  Transcriptomic and proteomic analyses of pericycle cells of the maize primary root.

Authors:  Diana Dembinsky; Katrin Woll; Muhammad Saleem; Yan Liu; Yan Fu; Lisa A Borsuk; Tobias Lamkemeyer; Claudia Fladerer; Johannes Madlung; Brad Barbazuk; Alfred Nordheim; Dan Nettleton; Patrick S Schnable; Frank Hochholdinger
Journal:  Plant Physiol       Date:  2007-08-31       Impact factor: 8.340

9.  A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.

Authors:  Adamantia Agalou; Sigit Purwantomo; Elin Overnäs; Henrik Johannesson; Xiaoyi Zhu; Amy Estiati; Rolf J de Kam; Peter Engström; Inez H Slamet-Loedin; Zhen Zhu; Mei Wang; Lizhong Xiong; Annemarie H Meijer; Pieter B F Ouwerkerk
Journal:  Plant Mol Biol       Date:  2007-11-13       Impact factor: 4.076

Review 10.  The gymnastics of epigenomics in rice.

Authors:  Aditya Banerjee; Aryadeep Roychoudhury
Journal:  Plant Cell Rep       Date:  2017-09-02       Impact factor: 4.570

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