Literature DB >> 21284393

A bulk water-dependent desolvation energy model for analyzing the effects of secondary solutes on biological equilibria.

Daryl K Eggers1.   

Abstract

A new phenomenological model for interpreting the effects of solutes on biological equilibria is presented. The model attributes changes in equilibria to differences in the desolvation energy of the reacting species that, in turn, reflect changes in the free energy of the bulk water upon addition of secondary solutes. The desolvation approach differs notably from that of other solute models by treating the free energy of bulk water as a variable and by not ascribing the observed shifts in reaction equilibria to accumulation or depletion of solutes next to the surfaces of the reacting species. On the contrary, the partitioning of solutes is viewed as a manifestation of the different subpopulations of water that arise in response to the surface boundary conditions. A thermodynamic framework consistent with the proposed model is used to derive a relationship for a specific reaction, an aqueous solubility equilibrium, in two or more solutions. The resulting equation reconciles some potential issues with the transfer free energy model of Tanford. Application of the desolvation energy model to the analysis of a two-state protein folding equilibrium is discussed and contrasted to the application of two other solute models developed by Timasheff and by Parsegian. Future tabulation of solvation energies and bulk water energies may allow biophysical chemists to confirm the mechanism by which secondary solutes influence binding and conformational equilibria and may provide a common ground on which experimentalists and theoreticians can compare and evaluate their results.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21284393      PMCID: PMC3062708          DOI: 10.1021/bi1017717

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  49 in total

1.  Determination of the volumetric properties of proteins and other solutes using pressure perturbation calorimetry.

Authors:  Lung-Nan Lin; John F Brandts; J Michael Brandts; Valerian Plotnikov
Journal:  Anal Biochem       Date:  2002-03-01       Impact factor: 3.365

Review 2.  Interpreting the effects of small uncharged solutes on protein-folding equilibria.

Authors:  P R Davis-Searles; A J Saunders; D A Erie; D J Winzor; G J Pielak
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

3.  Negligible effect of ions on the hydrogen-bond structure in liquid water.

Authors:  Anne Willem Omta; Michel F Kropman; Sander Woutersen; Huib J Bakker
Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

4.  THE EFFECT OF COMPOUNDS OF THE UREA-GUANIDINIUM CLASS ON THE ACTIVITY COEFFICIENT OF ACETYLTETRAGLYCINE ETHYL ESTER AND RELATED COMPOUNDS.

Authors:  D R ROBINSON; W P JENCKS
Journal:  J Am Chem Soc       Date:  1965-06-05       Impact factor: 15.419

5.  Why Hofmeister effects of many salts favor protein folding but not DNA helix formation.

Authors:  Laurel M Pegram; Timothy Wendorff; Robert Erdmann; Irina Shkel; Dana Bellissimo; Daniel J Felitsky; M Thomas Record
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

6.  The effects of dissolved halide anions on hydrogen bonding in liquid water.

Authors:  Jared D Smith; Richard J Saykally; Phillip L Geissler
Journal:  J Am Chem Soc       Date:  2007-10-25       Impact factor: 15.419

7.  Potential for modulation of the hydrophobic effect inside chaperonins.

Authors:  Jeremy L England; Vijay S Pande
Journal:  Biophys J       Date:  2008-07-03       Impact factor: 4.033

8.  The solubility of amino acids and related compounds in aqueous thylene glycol solutions.

Authors:  Y Nozaki; C Tanford
Journal:  J Biol Chem       Date:  1965-09       Impact factor: 5.157

9.  Limited validity of group additivity for the folding energetics of the peptide group.

Authors:  Franc Avbelj; Robert L Baldwin
Journal:  Proteins       Date:  2006-05-01

10.  Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface.

Authors:  Laurel M Pegram; M Thomas Record
Journal:  J Phys Chem B       Date:  2007-04-14       Impact factor: 2.991

View more
  3 in total

1.  A desolvation model for trifluoroethanol-induced aggregation of enhanced green fluorescent protein.

Authors:  Valerie L Anderson; Watt W Webb
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  Changes in apparent molar water volume and DKP solubility yield insights on the Hofmeister effect.

Authors:  Alexander Y Payumo; R Michael Huijon; Deauna D Mansfield; Laurel M Belk; Annie K Bui; Anne E Knight; Daryl K Eggers
Journal:  J Phys Chem B       Date:  2011-11-11       Impact factor: 2.991

3.  Experimental support for a desolvation energy term in governing equations for binding equilibria.

Authors:  Brian M Castellano; Daryl K Eggers
Journal:  J Phys Chem B       Date:  2013-07-01       Impact factor: 2.991

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.