Literature DB >> 17719556

Protein folding in confined and crowded environments.

Huan-Xiang Zhou1.   

Abstract

Confinement and crowding are two major factors that can potentially impact protein folding in cellular environments. Theories based on considerations of excluded volumes predict disparate effects on protein folding stability for confinement and crowding: confinement can stabilize proteins by over 10k(B)T but crowding has a very modest effect on stability. On the other hand, confinement and crowding are both predicted to favor conformations of the unfolded state which are compact, and consequently may increase the folding rate. These predictions are largely borne out by experimental studies of protein folding under confined and crowded conditions in the test tube. Protein folding in cellular environments is further complicated by interactions with surrounding surfaces and other factors. Concerted theoretical modeling and test-tube and in vivo experiments promise to elucidate the complexity of protein folding in cellular environments.

Mesh:

Year:  2007        PMID: 17719556      PMCID: PMC2223181          DOI: 10.1016/j.abb.2007.07.013

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  44 in total

1.  Protein folding and binding in confined spaces and in crowded solutions.

Authors:  Huan-Xiang Zhou
Journal:  J Mol Recognit       Date:  2004 Sep-Oct       Impact factor: 2.137

2.  Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: macromolecular crowding and protein stability revisited.

Authors:  Allen P Minton
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

3.  Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels.

Authors:  Barbara Campanini; Sara Bologna; Fabio Cannone; Giuseppe Chirico; Andrea Mozzarelli; Stefano Bettati
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

Review 4.  Protein aggregation in crowded environments.

Authors:  R John Ellis; Allen P Minton
Journal:  Biol Chem       Date:  2006-05       Impact factor: 3.915

5.  From the test tube to the cell: exploring the folding and aggregation of a beta-clam protein.

Authors:  Zoya Ignatova; Beena Krishnan; Jeffrey P Bombardier; Anna Marie C Marcelino; Jiang Hong; Lila M Gierasch
Journal:  Biopolymers       Date:  2007       Impact factor: 2.505

6.  Helix formation inside a nanotube: possible influence of backbone-water hydrogen bonding by the confining surface through modulation of water activity.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2007-12-28       Impact factor: 3.488

7.  Polymers interacting with spherical and rodlike particles.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-08

8.  Contact order, transition state placement and the refolding rates of single domain proteins.

Authors:  K W Plaxco; K T Simons; D Baker
Journal:  J Mol Biol       Date:  1998-04-10       Impact factor: 5.469

9.  15N NMR spin relaxation dispersion study of the molecular crowding effects on protein folding under native conditions.

Authors:  Xuanjun Ai; Zheng Zhou; Yawen Bai; Wing-Yiu Choy
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

10.  Protein folding by the effects of macromolecular crowding.

Authors:  Nobuhiko Tokuriki; Masataka Kinjo; Shigeru Negi; Masaru Hoshino; Yuji Goto; Itaru Urabe; Tetsuya Yomo
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

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  43 in total

1.  Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders.

Authors:  Jeetain Mittal; Robert B Best
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

2.  Single-molecule spectroscopy of protein folding in a chaperonin cage.

Authors:  Hagen Hofmann; Frank Hillger; Shawn H Pfeil; Armin Hoffmann; Daniel Streich; Dominik Haenni; Daniel Nettels; Everett A Lipman; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

3.  The proteasome antechamber maintains substrates in an unfolded state.

Authors:  Amy M Ruschak; Tomasz L Religa; Sarah Breuer; Susanne Witt; Lewis E Kay
Journal:  Nature       Date:  2010-10-14       Impact factor: 49.962

4.  Thermodynamics and kinetics of protein folding under confinement.

Authors:  Jeetain Mittal; Robert B Best
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-10       Impact factor: 11.205

5.  Effect of interactions with the chaperonin cavity on protein folding and misfolding.

Authors:  Anshul Sirur; Michael Knott; Robert B Best
Journal:  Phys Chem Chem Phys       Date:  2013-09-27       Impact factor: 3.676

6.  The effects of macromolecular crowding on the mechanical stability of protein molecules.

Authors:  Jian-Min Yuan; Chia-Lin Chyan; Huan-Xiang Zhou; Tse-Yu Chung; Haibo Peng; Guanghui Ping; Guoliang Yang
Journal:  Protein Sci       Date:  2008-09-09       Impact factor: 6.725

7.  Effect of mixed macromolecular crowding agents on protein folding.

Authors:  Huan-Xiang Zhou
Journal:  Proteins       Date:  2008-09

8.  Solution properties of γ-crystallins: hydration of fish and mammal γ-crystallins.

Authors:  Huaying Zhao; Yingwei Chen; Lenka Rezabkova; Zhengrong Wu; Graeme Wistow; Peter Schuck
Journal:  Protein Sci       Date:  2013-11-27       Impact factor: 6.725

Review 9.  Infrared spectroscopy of proteins in reverse micelles.

Authors:  Priscilla S-W Yeung; Gözde Eskici; Paul H Axelsen
Journal:  Biochim Biophys Acta       Date:  2012-10-22

10.  Solution properties of γ-crystallins: compact structure and low frictional ratio are conserved properties of diverse γ-crystallins.

Authors:  Yingwei Chen; Huaying Zhao; Peter Schuck; Graeme Wistow
Journal:  Protein Sci       Date:  2013-11-28       Impact factor: 6.725

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